PlantSME Plant secondary metabolism enzyme database

Ptilidium pulcherrimum (ptilidium_pulcherrimum)

Imported from atlas release summary for Ptilidium pulcherrimum.

583
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 28.13% Alkaloid pathway 21.27% Terpenoid pathway 19.55% Rosmarinic acid pathway 13.38% Flavonoid pathway 10.12% Steroid pathway 7.55%
Family Distribution
C4H 6.71% 4CL 5.82% C3'H/CYP98A 5.76% BAHD 4.76% CYP76 4.59% POD 4.47% GS 3.35% NMT 3.0%
Other Families 61.53%
More Families (95)
IFS 50 2.94% STR 49 2.88% DWF4/CYP90B1 48 2.82% T3O 38 2.24% F3H 37 2.18% IFR 35 2.06% PAL 30 1.76% BR6OX2/CYP85A2 30 1.76% T16H 29 1.71% F3'5'H/CYP75A 29 1.71% TRI/TRII 28 1.65% HCT 28 1.65% RAS 27 1.59% UGT 27 1.59% G8O/G8H 26 1.53% F3'H/CYP75B 26 1.53% CAD 25 1.47% H6H 21 1.24% CAS 18 1.06% IO 17 1.0% FNS 17 1.0% COR 16 0.94% 7DLGT 16 0.94% CSE 15 0.88% CYP71 15 0.88% NCS 13 0.76% SMT1/SMT2/SMT3 13 0.76% SGD 12 0.71% COMT 12 0.71% TPS 12 0.71% CODM/T6ODM 11 0.65% SLS 10 0.59% CNMT 10 0.59% LAMT 10 0.59% UFGT 10 0.59% PYKS 9 0.53% ANR 9 0.53% F5H/CYP84A 9 0.53% CPR 9 0.53% TAT 9 0.53% CYP90D1 9 0.53% GES 8 0.47% LAC 8 0.47% CPD/CYP90A1 8 0.47% PMT 7 0.41% AACT 7 0.41% 8HGO 6 0.35% ISY 6 0.35% ANS/LDOX 6 0.35% CCR 6 0.35% HPPR 6 0.35% ADC 5 0.29% 7DLH 5 0.29% SQS/FDFT1 5 0.29% FPPS 5 0.29% CYP80F1 4 0.24% CYP80B1 4 0.24% DFR 4 0.24% CYP51G1 4 0.24% BR6OX1/CYP85A1 4 0.24% FK 4 0.24% GGPPS 4 0.24% MPO 3 0.18% 16OMT 3 0.18% 6OMT_4OMT_SOMT 3 0.18% CHI 3 0.18% CCoAOMT 3 0.18% SQE 3 0.18% HYD1 3 0.18% DWF1 3 0.18% MCT/IspD 3 0.18% MVK 3 0.18% CMK/IspE 3 0.18% DXS 3 0.18% TDC 2 0.12% CHS 2 0.12% DET2 2 0.12% ROT3/CYP90C1 2 0.12% SMO1/SMO2 2 0.12% DWF5 2 0.12% MVD 2 0.12% IDI 2 0.12% HMGR 2 0.12% TYDC_DDC 1 0.06% ODC 1 0.06% XMT_MXMT_DXMT 1 0.06% BBE 1 0.06% FLS 1 0.06% DWF7 1 0.06% CPI1 1 0.06% HDS/IspG 1 0.06% PMK 1 0.06% HDR/IspH 1 0.06% HMGS 1 0.06% DXR 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 164 11 POD (71) View species results
Alkaloid pathway 124 18 NMT (20) View species results
Terpenoid pathway 114 18 BAHD (44) View species results
Rosmarinic acid pathway 78 7 4CL (21) View species results
Flavonoid pathway 59 11 4CL (21) View species results
Steroid pathway 44 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 657 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 136 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP71
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Gene Pathway Family Confidence Status Best Target
Ppul5288000046670 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
Ppul5469420058180 Terpenoid CYP71 low borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
Ppul5543760065160 Terpenoid CYP71 low borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
Ppul5735310115320 Terpenoid CYP71 low borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
Ppul5742560118870 Terpenoid CYP71 low borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
Ppul5748890122350 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
Ppul5766780133000 Terpenoid CYP71 low borderline CYP71__00002__sp_W8JDE2_C71Y1_CATRO
Ppul5811980173880 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
Ppul5816750179280 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
Ppul5829220196090 Terpenoid CYP71 low borderline CYP71__00001__sp_Q8W4D0_CPY71_ARATH
Ppul5829270196130 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
Ppul5830840198410 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH
Ppul5949190220990 Terpenoid CYP71 low borderline CYP71__00001__sp_Q8W4D0_CPY71_ARATH
Ppul5949200221000 Terpenoid CYP71 low borderline CYP71__00001__sp_Q8W4D0_CPY71_ARATH
Ppul6360224550 Terpenoid CYP71 medium pass CYP71__00001__sp_Q8W4D0_CPY71_ARATH