PlantSME Plant secondary metabolism enzyme database

Ptilidium pulcherrimum (ptilidium_pulcherrimum)

Imported from atlas release summary for Ptilidium pulcherrimum.

583
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 28.13% Alkaloid pathway 21.27% Terpenoid pathway 19.55% Rosmarinic acid pathway 13.38% Flavonoid pathway 10.12% Steroid pathway 7.55%
Family Distribution
C4H 6.71% 4CL 5.82% C3'H/CYP98A 5.76% BAHD 4.76% CYP76 4.59% POD 4.47% GS 3.35% NMT 3.0%
Other Families 61.53%
More Families (95)
IFS 50 2.94% STR 49 2.88% DWF4/CYP90B1 48 2.82% T3O 38 2.24% F3H 37 2.18% IFR 35 2.06% PAL 30 1.76% BR6OX2/CYP85A2 30 1.76% T16H 29 1.71% F3'5'H/CYP75A 29 1.71% TRI/TRII 28 1.65% HCT 28 1.65% RAS 27 1.59% UGT 27 1.59% G8O/G8H 26 1.53% F3'H/CYP75B 26 1.53% CAD 25 1.47% H6H 21 1.24% CAS 18 1.06% IO 17 1.0% FNS 17 1.0% COR 16 0.94% 7DLGT 16 0.94% CSE 15 0.88% CYP71 15 0.88% NCS 13 0.76% SMT1/SMT2/SMT3 13 0.76% SGD 12 0.71% COMT 12 0.71% TPS 12 0.71% CODM/T6ODM 11 0.65% SLS 10 0.59% CNMT 10 0.59% LAMT 10 0.59% UFGT 10 0.59% PYKS 9 0.53% ANR 9 0.53% F5H/CYP84A 9 0.53% CPR 9 0.53% TAT 9 0.53% CYP90D1 9 0.53% GES 8 0.47% LAC 8 0.47% CPD/CYP90A1 8 0.47% PMT 7 0.41% AACT 7 0.41% 8HGO 6 0.35% ISY 6 0.35% ANS/LDOX 6 0.35% CCR 6 0.35% HPPR 6 0.35% ADC 5 0.29% 7DLH 5 0.29% SQS/FDFT1 5 0.29% FPPS 5 0.29% CYP80F1 4 0.24% CYP80B1 4 0.24% DFR 4 0.24% CYP51G1 4 0.24% BR6OX1/CYP85A1 4 0.24% FK 4 0.24% GGPPS 4 0.24% MPO 3 0.18% 16OMT 3 0.18% 6OMT_4OMT_SOMT 3 0.18% CHI 3 0.18% CCoAOMT 3 0.18% SQE 3 0.18% HYD1 3 0.18% DWF1 3 0.18% MCT/IspD 3 0.18% MVK 3 0.18% CMK/IspE 3 0.18% DXS 3 0.18% TDC 2 0.12% CHS 2 0.12% DET2 2 0.12% ROT3/CYP90C1 2 0.12% SMO1/SMO2 2 0.12% DWF5 2 0.12% MVD 2 0.12% IDI 2 0.12% HMGR 2 0.12% TYDC_DDC 1 0.06% ODC 1 0.06% XMT_MXMT_DXMT 1 0.06% BBE 1 0.06% FLS 1 0.06% DWF7 1 0.06% CPI1 1 0.06% HDS/IspG 1 0.06% PMK 1 0.06% HDR/IspH 1 0.06% HMGS 1 0.06% DXR 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 164 11 POD (71) View species results
Alkaloid pathway 124 18 NMT (20) View species results
Terpenoid pathway 114 18 BAHD (44) View species results
Rosmarinic acid pathway 78 7 4CL (21) View species results
Flavonoid pathway 59 11 4CL (21) View species results
Steroid pathway 44 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 657 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 136 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status Best Target
Ppul3488810011250 Alkaloid IO medium borderline IO__00001__sp_W8JIS5_IO_CATRO
Ppul3515950013590 Alkaloid IO medium borderline IO__00001__sp_W8JIS5_IO_CATRO
Ppul3867520021000 Alkaloid IO medium borderline IO__00001__sp_W8JIS5_IO_CATRO
Ppul3867540021010 Alkaloid IO medium borderline IO__00001__sp_W8JIS5_IO_CATRO
Ppul4028460022890 Alkaloid IO medium borderline IO__00001__sp_W8JIS5_IO_CATRO
Ppul4234250024990 Alkaloid IO medium borderline IO__00001__sp_W8JIS5_IO_CATRO
Ppul4785890031930 Alkaloid IO medium pass IO__00001__sp_W8JIS5_IO_CATRO
Ppul5050038890 Alkaloid IO medium borderline IO__00001__sp_W8JIS5_IO_CATRO
Ppul5087830041600 Alkaloid IO medium borderline IO__00001__sp_W8JIS5_IO_CATRO
Ppul5358180052330 Alkaloid IO medium borderline IO__00001__sp_W8JIS5_IO_CATRO
Ppul5431480054590 Alkaloid IO medium borderline IO__00001__sp_W8JIS5_IO_CATRO
Ppul5598630073700 Alkaloid IO medium borderline IO__00001__sp_W8JIS5_IO_CATRO
Ppul5612460076640 Alkaloid IO medium borderline IO__00001__sp_W8JIS5_IO_CATRO
Ppul5714650105510 Alkaloid IO low borderline IO__00001__sp_W8JIS5_IO_CATRO
Ppul5764450131200 Alkaloid IO medium borderline IO__00001__sp_W8JIS5_IO_CATRO
Ppul5766780133000 Alkaloid IO medium borderline IO__00001__sp_W8JIS5_IO_CATRO
Ppul5815600177940 Alkaloid IO medium pass IO__00001__sp_W8JIS5_IO_CATRO