Pyrus bretschneideri (pyrus_bretschneideri)
Imported from atlas release summary for Pyrus bretschneideri.
2298
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2298
Candidate Genes
C4H
6.18%
C3'H/CYP98A
5.93%
BAHD
5.4%
UGT
4.82%
7DLGT
4.04%
UFGT
3.94%
IFS
3.9%
CYP76
3.78%
Other Families
62.01%
More Families (96)
F3H
196
3.46%
POD
194
3.43%
4CL
171
3.02%
T3O
159
2.81%
DWF4/CYP90B1
143
2.52%
H6H
122
2.15%
BR6OX2/CYP85A2
105
1.85%
F3'H/CYP75B
100
1.77%
NMT
99
1.75%
CODM/T6ODM
98
1.73%
STR
95
1.68%
CAD
95
1.68%
CAS
78
1.38%
LAC
73
1.29%
GS
70
1.24%
IFR
63
1.11%
IO
62
1.09%
CYP71
62
1.09%
SGD
61
1.08%
PYKS
60
1.06%
CSE
57
1.01%
TPS
54
0.95%
CYP90D1
52
0.92%
TRI/TRII
51
0.9%
GES
50
0.88%
SMT1/SMT2/SMT3
46
0.81%
7DLH
45
0.79%
G8O/G8H
45
0.79%
F3'5'H/CYP75A
43
0.76%
HCT
43
0.76%
ANR
42
0.74%
BBE
41
0.72%
TAT
40
0.71%
NCS
39
0.69%
CCR
39
0.69%
F5H/CYP84A
39
0.69%
SLS
38
0.67%
COMT
38
0.67%
RAS
35
0.62%
LAMT
32
0.56%
PMT
31
0.55%
T16H
30
0.53%
BR6OX1/CYP85A1
28
0.49%
DFR
26
0.46%
16OMT
25
0.44%
FNS
25
0.44%
COR
24
0.42%
SQE
21
0.37%
CHS
20
0.35%
ANS/LDOX
18
0.32%
CYP51G1
17
0.3%
CYP719
16
0.28%
8HGO
15
0.26%
MPO
14
0.25%
AACT
14
0.25%
ISY
11
0.19%
ROT3/CYP90C1
11
0.19%
CHI
10
0.18%
FPPS
10
0.18%
TYDC_DDC
9
0.16%
PAL
9
0.16%
CCoAOMT
9
0.16%
CPD/CYP90A1
9
0.16%
CNMT
8
0.14%
HPPR
8
0.14%
SQS/FDFT1
8
0.14%
CYP80B1
7
0.12%
CPR
7
0.12%
GGPPS
7
0.12%
SMO1/SMO2
6
0.11%
CYP80F1
5
0.09%
DWF7
5
0.09%
HMGS
5
0.09%
HMGR
5
0.09%
MCT/IspD
5
0.09%
MVD
5
0.09%
DXS
5
0.09%
TDC
4
0.07%
CPI1
4
0.07%
FK
4
0.07%
MVK
4
0.07%
PMK
4
0.07%
DXR
4
0.07%
FLS
3
0.05%
DET2
3
0.05%
HYD1
3
0.05%
MDS/IspF
3
0.05%
ODC
2
0.04%
CMK/IspE
2
0.04%
HDS/IspG
2
0.04%
HDR/IspH
2
0.04%
6OMT_4OMT_SOMT
1
0.02%
ADC
1
0.02%
DWF5
1
0.02%
DWF1
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 683 | 18 | UGT (251) | View species results |
| Alkaloid pathway | 536 | 23 | 7DLGT (131) | View species results |
| Phenylpropanoid pathway | 458 | 12 | POD (177) | View species results |
| Flavonoid pathway | 326 | 13 | UFGT (211) | View species results |
| Rosmarinic acid pathway | 166 | 7 | C4H (69) | View species results |
| Steroid pathway | 129 | 11 | CAS (63) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2137 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 384 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pbre01G0000570 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| Pbre02G0005840 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Pbre02G0005880 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Pbre04G0006040 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Pbre04G0006050 | Alkaloid | COR | medium | pass | COR__00001__sp_B9VRJ2_COR15_PAPSO |
| Pbre04G0006700 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Pbre05G0000670 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| Pbre05G0004130 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| Pbre05G0004230 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| Pbre05G0004250 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| Pbre10G0021650 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| Pbre10G0021670 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Pbre12G0007890 | Alkaloid | COR | low | borderline | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| Pbre12G0007900 | Alkaloid | COR | medium | pass | COR__00005__sp_Q9SQ70_COR11_PAPSO |
| Pbre12G0007910 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Pbre12G0007920 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Pbre12G0007930 | Alkaloid | COR | medium | pass | COR__00003__sp_Q9SQ68_COR13_PAPSO |
| Pbre12G0007960 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Pbre16G0000320 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Pbre16G0004010 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Pbre16G0004020 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Pbre16G0004030 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Pbre16G0004390 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| Pbrescaffold195.00027110 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |