PlantSME Plant secondary metabolism enzyme database

Pyrus bretschneideri (pyrus_bretschneideri)

Imported from atlas release summary for Pyrus bretschneideri.

2298
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.72% Alkaloid pathway 23.32% Phenylpropanoid pathway 19.93% Flavonoid pathway 14.19% Rosmarinic acid pathway 7.22% Steroid pathway 5.61%
Family Distribution
C4H 6.18% C3'H/CYP98A 5.93% BAHD 5.4% UGT 4.82% 7DLGT 4.04% UFGT 3.94% IFS 3.9% CYP76 3.78%
Other Families 62.01%
More Families (96)
F3H 196 3.46% POD 194 3.43% 4CL 171 3.02% T3O 159 2.81% DWF4/CYP90B1 143 2.52% H6H 122 2.15% BR6OX2/CYP85A2 105 1.85% F3'H/CYP75B 100 1.77% NMT 99 1.75% CODM/T6ODM 98 1.73% STR 95 1.68% CAD 95 1.68% CAS 78 1.38% LAC 73 1.29% GS 70 1.24% IFR 63 1.11% IO 62 1.09% CYP71 62 1.09% SGD 61 1.08% PYKS 60 1.06% CSE 57 1.01% TPS 54 0.95% CYP90D1 52 0.92% TRI/TRII 51 0.9% GES 50 0.88% SMT1/SMT2/SMT3 46 0.81% 7DLH 45 0.79% G8O/G8H 45 0.79% F3'5'H/CYP75A 43 0.76% HCT 43 0.76% ANR 42 0.74% BBE 41 0.72% TAT 40 0.71% NCS 39 0.69% CCR 39 0.69% F5H/CYP84A 39 0.69% SLS 38 0.67% COMT 38 0.67% RAS 35 0.62% LAMT 32 0.56% PMT 31 0.55% T16H 30 0.53% BR6OX1/CYP85A1 28 0.49% DFR 26 0.46% 16OMT 25 0.44% FNS 25 0.44% COR 24 0.42% SQE 21 0.37% CHS 20 0.35% ANS/LDOX 18 0.32% CYP51G1 17 0.3% CYP719 16 0.28% 8HGO 15 0.26% MPO 14 0.25% AACT 14 0.25% ISY 11 0.19% ROT3/CYP90C1 11 0.19% CHI 10 0.18% FPPS 10 0.18% TYDC_DDC 9 0.16% PAL 9 0.16% CCoAOMT 9 0.16% CPD/CYP90A1 9 0.16% CNMT 8 0.14% HPPR 8 0.14% SQS/FDFT1 8 0.14% CYP80B1 7 0.12% CPR 7 0.12% GGPPS 7 0.12% SMO1/SMO2 6 0.11% CYP80F1 5 0.09% DWF7 5 0.09% HMGS 5 0.09% HMGR 5 0.09% MCT/IspD 5 0.09% MVD 5 0.09% DXS 5 0.09% TDC 4 0.07% CPI1 4 0.07% FK 4 0.07% MVK 4 0.07% PMK 4 0.07% DXR 4 0.07% FLS 3 0.05% DET2 3 0.05% HYD1 3 0.05% MDS/IspF 3 0.05% ODC 2 0.04% CMK/IspE 2 0.04% HDS/IspG 2 0.04% HDR/IspH 2 0.04% 6OMT_4OMT_SOMT 1 0.02% ADC 1 0.02% DWF5 1 0.02% DWF1 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 683 18 UGT (251) View species results
Alkaloid pathway 536 23 7DLGT (131) View species results
Phenylpropanoid pathway 458 12 POD (177) View species results
Flavonoid pathway 326 13 UFGT (211) View species results
Rosmarinic acid pathway 166 7 C4H (69) View species results
Steroid pathway 129 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2137 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 384 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
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Gene Pathway Family Confidence Status
Pbre02G0006710 Alkaloid LAMT medium borderline
Pbre02G0006730 Alkaloid LAMT medium pass
Pbre02G0012110 Alkaloid LAMT medium borderline
Pbre03G0005700 Alkaloid LAMT medium borderline
Pbre03G0015280 Alkaloid LAMT low borderline
Pbre05G0002780 Alkaloid LAMT medium borderline
Pbre06G0003030 Alkaloid LAMT medium borderline
Pbre06G0004320 Alkaloid LAMT medium borderline
Pbre06G0004330 Alkaloid LAMT medium borderline
Pbre06G0004340 Alkaloid LAMT medium pass
Pbre06G0004350 Alkaloid LAMT medium borderline
Pbre06G0004360 Alkaloid LAMT medium borderline
Pbre06G0004370 Alkaloid LAMT medium borderline
Pbre09G0002600 Alkaloid LAMT medium borderline
Pbre09G0002610 Alkaloid LAMT medium borderline
Pbre10G0000980 Alkaloid LAMT medium borderline
Pbre10G0001130 Alkaloid LAMT medium borderline
Pbre10G0019040 Alkaloid LAMT medium borderline
Pbre10G0019060 Alkaloid LAMT medium borderline
Pbre10G0019100 Alkaloid LAMT medium borderline
Pbre10G0020660 Alkaloid LAMT medium pass
Pbre11G0015040 Alkaloid LAMT low borderline
Pbre14G0014420 Alkaloid LAMT medium borderline
Pbre14G0014430 Alkaloid LAMT medium pass
Pbre14G0014440 Alkaloid LAMT medium borderline
Pbre14G0014450 Alkaloid LAMT medium borderline
Pbre14G0014460 Alkaloid LAMT medium pass
Pbre15G0000840 Alkaloid LAMT medium borderline
Pbre15G0004150 Alkaloid LAMT medium borderline
Pbre15G0004170 Alkaloid LAMT medium borderline
Pbre15G0004190 Alkaloid LAMT medium borderline
Pbre16G0003630 Alkaloid LAMT medium borderline