Pyrus communis (pyrus_communis)
Imported from atlas release summary for Pyrus communis.
1818
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1818
Candidate Genes
C4H
6.13%
BAHD
5.85%
C3'H/CYP98A
5.57%
UGT
4.36%
7DLGT
3.92%
IFS
3.9%
UFGT
3.76%
CYP76
3.69%
Other Families
62.82%
More Families (96)
POD
144
3.34%
T3O
135
3.13%
4CL
132
3.06%
F3H
123
2.85%
DWF4/CYP90B1
96
2.23%
NMT
94
2.18%
CAD
79
1.83%
H6H
73
1.69%
BR6OX2/CYP85A2
73
1.69%
F3'H/CYP75B
71
1.65%
STR
65
1.51%
GS
62
1.44%
CODM/T6ODM
62
1.44%
TRI/TRII
58
1.35%
CYP71
57
1.32%
CAS
52
1.21%
HCT
48
1.11%
LAC
46
1.07%
COMT
44
1.02%
SGD
43
1.0%
SMT1/SMT2/SMT3
43
1.0%
CYP90D1
42
0.97%
7DLH
41
0.95%
IO
40
0.93%
CSE
40
0.93%
TAT
39
0.91%
IFR
37
0.86%
RAS
37
0.86%
ANR
33
0.77%
PYKS
32
0.74%
PMT
32
0.74%
TPS
31
0.72%
LAMT
30
0.7%
CCR
30
0.7%
BR6OX1/CYP85A1
30
0.7%
16OMT
29
0.67%
T16H
28
0.65%
GES
27
0.63%
F3'5'H/CYP75A
25
0.58%
NCS
24
0.56%
SLS
22
0.51%
G8O/G8H
22
0.51%
F5H/CYP84A
22
0.51%
SQE
22
0.51%
8HGO
21
0.49%
COR
21
0.49%
BBE
19
0.44%
PAL
18
0.42%
FNS
18
0.42%
ROT3/CYP90C1
18
0.42%
DFR
17
0.39%
CPD/CYP90A1
17
0.39%
CHS
15
0.35%
CPR
15
0.35%
CYP51G1
15
0.35%
CNMT
11
0.26%
ISY
11
0.26%
ANS/LDOX
11
0.26%
CYP719
10
0.23%
AACT
10
0.23%
FPPS
10
0.23%
MPO
9
0.21%
CCoAOMT
9
0.21%
DXS
9
0.21%
GGPPS
9
0.21%
CYP80B1
7
0.16%
CHI
7
0.16%
HPPR
7
0.16%
SQS/FDFT1
6
0.14%
HYD1
5
0.12%
HMGR
5
0.12%
MVD
5
0.12%
HMGS
5
0.12%
TYDC_DDC
4
0.09%
DET2
4
0.09%
SMO1/SMO2
4
0.09%
MCT/IspD
4
0.09%
ADC
3
0.07%
FK
3
0.07%
MVK
3
0.07%
PMK
3
0.07%
TDC
2
0.05%
CPI1
2
0.05%
DWF5
2
0.05%
DWF7
2
0.05%
DWF1
2
0.05%
IDI
2
0.05%
MDS/IspF
2
0.05%
DXR
2
0.05%
CMK/IspE
2
0.05%
ODC
1
0.02%
XMT_MXMT_DXMT
1
0.02%
CYP80F1
1
0.02%
FLS
1
0.02%
HDR/IspH
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 526 | 19 | BAHD (204) | View species results |
| Alkaloid pathway | 423 | 24 | 7DLGT (89) | View species results |
| Phenylpropanoid pathway | 360 | 11 | POD (137) | View species results |
| Flavonoid pathway | 229 | 11 | UFGT (147) | View species results |
| Rosmarinic acid pathway | 164 | 7 | C4H (64) | View species results |
| Steroid pathway | 116 | 14 | CAS (46) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1603 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 337 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| PYcom01G0018270.1 | Alkaloid | PMT | medium | borderline |
| PYcom02G0001100.1 | Alkaloid | PMT | low | borderline |
| PYcom02G0001150.1 | Alkaloid | PMT | medium | pass |
| PYcom03G0005330.1 | Alkaloid | PMT | medium | pass |
| PYcom04G0012940.1 | Alkaloid | PMT | low | borderline |
| PYcom04G0012980.1 | Alkaloid | PMT | low | borderline |
| PYcom04G0012990.1 | Alkaloid | PMT | low | borderline |
| PYcom06G0001120.1 | Alkaloid | PMT | medium | pass |
| PYcom06G0001140.1 | Alkaloid | PMT | medium | pass |
| PYcom06G0001160.1 | Alkaloid | PMT | medium | pass |
| PYcom06G0001280.1 | Alkaloid | PMT | medium | pass |
| PYcom06G0001290.1 | Alkaloid | PMT | medium | pass |
| PYcom06G0001300.1 | Alkaloid | PMT | medium | pass |
| PYcom06G0009880.1 | Alkaloid | PMT | low | borderline |
| PYcom06G0012260.1 | Alkaloid | PMT | medium | borderline |
| PYcom07G0006480.1 | Alkaloid | PMT | low | borderline |
| PYcom07G0006490.1 | Alkaloid | PMT | low | borderline |
| PYcom07G0021130.1 | Alkaloid | PMT | medium | borderline |
| PYcom08G0004890.1 | Alkaloid | PMT | medium | pass |
| PYcom09G0011430.1 | Alkaloid | PMT | low | borderline |
| PYcom09G0011640.1 | Alkaloid | PMT | medium | pass |
| PYcom12G0002820.1 | Alkaloid | PMT | medium | pass |
| PYcom13G0006850.1 | Alkaloid | PMT | medium | borderline |
| PYcom13G0014170.1 | Alkaloid | PMT | medium | pass |
| PYcom15G0000100.1 | Alkaloid | PMT | low | borderline |
| PYcom15G0004290.1 | Alkaloid | PMT | medium | pass |
| PYcom16G0006900.1 | Alkaloid | PMT | medium | borderline |
| PYcom16G0014070.1 | Alkaloid | PMT | low | borderline |
| PYcom16G0014870.1 | Alkaloid | PMT | low | borderline |
| PYcom17G0000570.1 | Alkaloid | PMT | medium | pass |
| PYcom17G0018110.1 | Alkaloid | PMT | low | borderline |
| PYcomSuperScaffold_1110000530.1 | Alkaloid | PMT | low | borderline |