PlantSME Plant secondary metabolism enzyme database

Pyrus communis (pyrus_communis)

Imported from atlas release summary for Pyrus communis.

1818
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.93% Alkaloid pathway 23.27% Phenylpropanoid pathway 19.8% Flavonoid pathway 12.6% Rosmarinic acid pathway 9.02% Steroid pathway 6.38%
Family Distribution
C4H 6.13% BAHD 5.85% C3'H/CYP98A 5.57% UGT 4.36% 7DLGT 3.92% IFS 3.9% UFGT 3.76% CYP76 3.69%
Other Families 62.82%
More Families (96)
POD 144 3.34% T3O 135 3.13% 4CL 132 3.06% F3H 123 2.85% DWF4/CYP90B1 96 2.23% NMT 94 2.18% CAD 79 1.83% H6H 73 1.69% BR6OX2/CYP85A2 73 1.69% F3'H/CYP75B 71 1.65% STR 65 1.51% GS 62 1.44% CODM/T6ODM 62 1.44% TRI/TRII 58 1.35% CYP71 57 1.32% CAS 52 1.21% HCT 48 1.11% LAC 46 1.07% COMT 44 1.02% SGD 43 1.0% SMT1/SMT2/SMT3 43 1.0% CYP90D1 42 0.97% 7DLH 41 0.95% IO 40 0.93% CSE 40 0.93% TAT 39 0.91% IFR 37 0.86% RAS 37 0.86% ANR 33 0.77% PYKS 32 0.74% PMT 32 0.74% TPS 31 0.72% LAMT 30 0.7% CCR 30 0.7% BR6OX1/CYP85A1 30 0.7% 16OMT 29 0.67% T16H 28 0.65% GES 27 0.63% F3'5'H/CYP75A 25 0.58% NCS 24 0.56% SLS 22 0.51% G8O/G8H 22 0.51% F5H/CYP84A 22 0.51% SQE 22 0.51% 8HGO 21 0.49% COR 21 0.49% BBE 19 0.44% PAL 18 0.42% FNS 18 0.42% ROT3/CYP90C1 18 0.42% DFR 17 0.39% CPD/CYP90A1 17 0.39% CHS 15 0.35% CPR 15 0.35% CYP51G1 15 0.35% CNMT 11 0.26% ISY 11 0.26% ANS/LDOX 11 0.26% CYP719 10 0.23% AACT 10 0.23% FPPS 10 0.23% MPO 9 0.21% CCoAOMT 9 0.21% DXS 9 0.21% GGPPS 9 0.21% CYP80B1 7 0.16% CHI 7 0.16% HPPR 7 0.16% SQS/FDFT1 6 0.14% HYD1 5 0.12% HMGR 5 0.12% MVD 5 0.12% HMGS 5 0.12% TYDC_DDC 4 0.09% DET2 4 0.09% SMO1/SMO2 4 0.09% MCT/IspD 4 0.09% ADC 3 0.07% FK 3 0.07% MVK 3 0.07% PMK 3 0.07% TDC 2 0.05% CPI1 2 0.05% DWF5 2 0.05% DWF7 2 0.05% DWF1 2 0.05% IDI 2 0.05% MDS/IspF 2 0.05% DXR 2 0.05% CMK/IspE 2 0.05% ODC 1 0.02% XMT_MXMT_DXMT 1 0.02% CYP80F1 1 0.02% FLS 1 0.02% HDR/IspH 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 526 19 BAHD (204) View species results
Alkaloid pathway 423 24 7DLGT (89) View species results
Phenylpropanoid pathway 360 11 POD (137) View species results
Flavonoid pathway 229 11 UFGT (147) View species results
Rosmarinic acid pathway 164 7 C4H (64) View species results
Steroid pathway 116 14 CAS (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1603 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 337 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ROT3/CYP90C1
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Gene Pathway Family Confidence Status
PYcom02G0009440.1 Steroid ROT3/CYP90C1 medium borderline
PYcom02G0016220.1 Steroid ROT3/CYP90C1 medium borderline
PYcom03G0012150.1 Steroid ROT3/CYP90C1 medium borderline
PYcom06G0004200.1 Steroid ROT3/CYP90C1 low borderline
PYcom07G0005500.1 Steroid ROT3/CYP90C1 medium borderline
PYcom09G0000020.1 Steroid ROT3/CYP90C1 medium borderline
PYcom09G0009100.1 Steroid ROT3/CYP90C1 medium borderline
PYcom16G0018500.1 Steroid ROT3/CYP90C1 low borderline
PYcom16G0020730.1 Steroid ROT3/CYP90C1 low borderline
PYcom17G0013340.1 Steroid ROT3/CYP90C1 low borderline
PYcom17G0014260.1 Steroid ROT3/CYP90C1 low borderline
PYcom17G0017720.1 Steroid ROT3/CYP90C1 low borderline
PYcomSuperScaffold_4200005530.1 Steroid ROT3/CYP90C1 medium borderline
PYcomtig000005100008520.1 Steroid ROT3/CYP90C1 low borderline
PYcomtig000009920009400.1 Steroid ROT3/CYP90C1 low borderline
PYcomtig000018450010540.1 Steroid ROT3/CYP90C1 low borderline
PYcomtig000124050012420.1 Steroid ROT3/CYP90C1 low borderline
PYcomtig000125750014520.1 Steroid ROT3/CYP90C1 low borderline