PlantSME Plant secondary metabolism enzyme database

Pyrus communis (pyrus_communis)

Imported from atlas release summary for Pyrus communis.

1818
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.93% Alkaloid pathway 23.27% Phenylpropanoid pathway 19.8% Flavonoid pathway 12.6% Rosmarinic acid pathway 9.02% Steroid pathway 6.38%
Family Distribution
C4H 6.13% BAHD 5.85% C3'H/CYP98A 5.57% UGT 4.36% 7DLGT 3.92% IFS 3.9% UFGT 3.76% CYP76 3.69%
Other Families 62.82%
More Families (96)
POD 144 3.34% T3O 135 3.13% 4CL 132 3.06% F3H 123 2.85% DWF4/CYP90B1 96 2.23% NMT 94 2.18% CAD 79 1.83% H6H 73 1.69% BR6OX2/CYP85A2 73 1.69% F3'H/CYP75B 71 1.65% STR 65 1.51% GS 62 1.44% CODM/T6ODM 62 1.44% TRI/TRII 58 1.35% CYP71 57 1.32% CAS 52 1.21% HCT 48 1.11% LAC 46 1.07% COMT 44 1.02% SGD 43 1.0% SMT1/SMT2/SMT3 43 1.0% CYP90D1 42 0.97% 7DLH 41 0.95% IO 40 0.93% CSE 40 0.93% TAT 39 0.91% IFR 37 0.86% RAS 37 0.86% ANR 33 0.77% PYKS 32 0.74% PMT 32 0.74% TPS 31 0.72% LAMT 30 0.7% CCR 30 0.7% BR6OX1/CYP85A1 30 0.7% 16OMT 29 0.67% T16H 28 0.65% GES 27 0.63% F3'5'H/CYP75A 25 0.58% NCS 24 0.56% SLS 22 0.51% G8O/G8H 22 0.51% F5H/CYP84A 22 0.51% SQE 22 0.51% 8HGO 21 0.49% COR 21 0.49% BBE 19 0.44% PAL 18 0.42% FNS 18 0.42% ROT3/CYP90C1 18 0.42% DFR 17 0.39% CPD/CYP90A1 17 0.39% CHS 15 0.35% CPR 15 0.35% CYP51G1 15 0.35% CNMT 11 0.26% ISY 11 0.26% ANS/LDOX 11 0.26% CYP719 10 0.23% AACT 10 0.23% FPPS 10 0.23% MPO 9 0.21% CCoAOMT 9 0.21% DXS 9 0.21% GGPPS 9 0.21% CYP80B1 7 0.16% CHI 7 0.16% HPPR 7 0.16% SQS/FDFT1 6 0.14% HYD1 5 0.12% HMGR 5 0.12% MVD 5 0.12% HMGS 5 0.12% TYDC_DDC 4 0.09% DET2 4 0.09% SMO1/SMO2 4 0.09% MCT/IspD 4 0.09% ADC 3 0.07% FK 3 0.07% MVK 3 0.07% PMK 3 0.07% TDC 2 0.05% CPI1 2 0.05% DWF5 2 0.05% DWF7 2 0.05% DWF1 2 0.05% IDI 2 0.05% MDS/IspF 2 0.05% DXR 2 0.05% CMK/IspE 2 0.05% ODC 1 0.02% XMT_MXMT_DXMT 1 0.02% CYP80F1 1 0.02% FLS 1 0.02% HDR/IspH 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 526 19 BAHD (204) View species results
Alkaloid pathway 423 24 7DLGT (89) View species results
Phenylpropanoid pathway 360 11 POD (137) View species results
Flavonoid pathway 229 11 UFGT (147) View species results
Rosmarinic acid pathway 164 7 C4H (64) View species results
Steroid pathway 116 14 CAS (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1603 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 337 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
PYcom02G0013230.1 Steroid SQE medium pass
PYcom02G0013240.1 Steroid SQE medium pass
PYcom02G0013340.1 Steroid SQE low borderline
PYcom02G0019110.1 Steroid SQE medium pass
PYcom02G0019120.1 Steroid SQE high pass
PYcom05G0008320.1 Steroid SQE medium pass
PYcom05G0008330.1 Steroid SQE medium pass
PYcom05G0008360.1 Steroid SQE medium pass
PYcom07G0002450.1 Steroid SQE medium pass
PYcom07G0002460.1 Steroid SQE medium pass
PYcom07G0002470.1 Steroid SQE medium pass
PYcom07G0002480.1 Steroid SQE medium pass
PYcom07G0002490.1 Steroid SQE medium pass
PYcom07G0002500.1 Steroid SQE medium pass
PYcom07G0002510.1 Steroid SQE medium pass
PYcom08G0005350.1 Steroid SQE medium pass
PYcom09G0014810.1 Steroid SQE low borderline
PYcom10G0007830.1 Steroid SQE medium pass
PYcom11G0016220.1 Steroid SQE low borderline
PYcom15G0005260.1 Steroid SQE medium pass
PYcom15G0022720.1 Steroid SQE medium pass
PYcom15G0022730.1 Steroid SQE medium pass