PlantSME Plant secondary metabolism enzyme database

Pyrus communis (pyrus_communis)

Imported from atlas release summary for Pyrus communis.

2134
Candidate Protein Records
1818
Pathway-Level Records
4309
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.93% Alkaloid pathway 23.27% Phenylpropanoid pathway 19.8% Flavonoid pathway 12.6% Rosmarinic acid pathway 9.02% Steroid pathway 6.38%
Family Distribution
C4H 6.13% BAHD 5.85% C3'H/CYP98A 5.57% UGT 4.36% 7DLGT 3.92% IFS 3.9% UFGT 3.76% CYP76 3.69%
Other Families 62.82%
More Families (96)
POD 144 3.34% T3O 135 3.13% 4CL 132 3.06% F3H 123 2.85% DWF4/CYP90B1 96 2.23% NMT 94 2.18% CAD 79 1.83% H6H 73 1.69% BR6OX2/CYP85A2 73 1.69% F3'H/CYP75B 71 1.65% STR 65 1.51% GS 62 1.44% CODM/T6ODM 62 1.44% TRI/TRII 58 1.35% CYP71 57 1.32% CAS 52 1.21% HCT 48 1.11% LAC 46 1.07% COMT 44 1.02% SGD 43 1.0% SMT1/SMT2/SMT3 43 1.0% CYP90D1 42 0.97% 7DLH 41 0.95% IO 40 0.93% CSE 40 0.93% TAT 39 0.91% IFR 37 0.86% RAS 37 0.86% ANR 33 0.77% PYKS 32 0.74% PMT 32 0.74% TPS 31 0.72% LAMT 30 0.7% CCR 30 0.7% BR6OX1/CYP85A1 30 0.7% 16OMT 29 0.67% T16H 28 0.65% GES 27 0.63% F3'5'H/CYP75A 25 0.58% NCS 24 0.56% SLS 22 0.51% G8O/G8H 22 0.51% F5H/CYP84A 22 0.51% SQE 22 0.51% 8HGO 21 0.49% COR 21 0.49% BBE 19 0.44% PAL 18 0.42% FNS 18 0.42% ROT3/CYP90C1 18 0.42% DFR 17 0.39% CPD/CYP90A1 17 0.39% CHS 15 0.35% CPR 15 0.35% CYP51G1 15 0.35% CNMT 11 0.26% ISY 11 0.26% ANS/LDOX 11 0.26% CYP719 10 0.23% AACT 10 0.23% FPPS 10 0.23% MPO 9 0.21% CCoAOMT 9 0.21% DXS 9 0.21% GGPPS 9 0.21% CYP80B1 7 0.16% CHI 7 0.16% HPPR 7 0.16% SQS/FDFT1 6 0.14% HYD1 5 0.12% HMGR 5 0.12% MVD 5 0.12% HMGS 5 0.12% TYDC_DDC 4 0.09% DET2 4 0.09% SMO1/SMO2 4 0.09% MCT/IspD 4 0.09% ADC 3 0.07% FK 3 0.07% MVK 3 0.07% PMK 3 0.07% TDC 2 0.05% CPI1 2 0.05% DWF5 2 0.05% DWF7 2 0.05% DWF1 2 0.05% IDI 2 0.05% MDS/IspF 2 0.05% DXR 2 0.05% CMK/IspE 2 0.05% ODC 1 0.02% XMT_MXMT_DXMT 1 0.02% CYP80F1 1 0.02% FLS 1 0.02% HDR/IspH 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 526 19 BAHD (204) View species results
Alkaloid pathway 423 24 7DLGT (89) View species results
Phenylpropanoid pathway 360 11 POD (137) View species results
Flavonoid pathway 229 11 UFGT (147) View species results
Rosmarinic acid pathway 164 7 C4H (64) View species results
Steroid pathway 116 14 CAS (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1603 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 337 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status Best Target
PYcom15G0019400.1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
PYcom15G0022200.1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
PYcom15G0024010.1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
PYcom15G0024020.1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
PYcom15G0025870.1 Phenylpropanoid POD medium pass POD__00015__sp_Q69SV0_APX8_ORYSJ
PYcom16G0001150.1 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
PYcom16G0004030.1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
PYcom16G0005120.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
PYcom16G0011380.1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
PYcom16G0013700.1 Phenylpropanoid POD medium pass POD__00023__sp_Q9M7T0_PRX2F_ARATH
PYcom16G0014810.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
PYcom17G0003190.1 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
PYcom17G0007490.1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
PYcom17G0007570.1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
PYcomSuperScaffold_1110000690.1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
PYcomSuperScaffold_1110000700.1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
PYcomSuperScaffold_1110002790.1 Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL