Pyrus communis (pyrus_communis)
Imported from atlas release summary for Pyrus communis.
2134
Candidate Protein Records
1818
Pathway-Level Records
4309
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4309
Family-Level Calls
C4H
6.13%
BAHD
5.85%
C3'H/CYP98A
5.57%
UGT
4.36%
7DLGT
3.92%
IFS
3.9%
UFGT
3.76%
CYP76
3.69%
Other Families
62.82%
More Families (96)
POD
144
3.34%
T3O
135
3.13%
4CL
132
3.06%
F3H
123
2.85%
DWF4/CYP90B1
96
2.23%
NMT
94
2.18%
CAD
79
1.83%
H6H
73
1.69%
BR6OX2/CYP85A2
73
1.69%
F3'H/CYP75B
71
1.65%
STR
65
1.51%
GS
62
1.44%
CODM/T6ODM
62
1.44%
TRI/TRII
58
1.35%
CYP71
57
1.32%
CAS
52
1.21%
HCT
48
1.11%
LAC
46
1.07%
COMT
44
1.02%
SGD
43
1.0%
SMT1/SMT2/SMT3
43
1.0%
CYP90D1
42
0.97%
7DLH
41
0.95%
IO
40
0.93%
CSE
40
0.93%
TAT
39
0.91%
IFR
37
0.86%
RAS
37
0.86%
ANR
33
0.77%
PYKS
32
0.74%
PMT
32
0.74%
TPS
31
0.72%
LAMT
30
0.7%
CCR
30
0.7%
BR6OX1/CYP85A1
30
0.7%
16OMT
29
0.67%
T16H
28
0.65%
GES
27
0.63%
F3'5'H/CYP75A
25
0.58%
NCS
24
0.56%
SLS
22
0.51%
G8O/G8H
22
0.51%
F5H/CYP84A
22
0.51%
SQE
22
0.51%
8HGO
21
0.49%
COR
21
0.49%
BBE
19
0.44%
PAL
18
0.42%
FNS
18
0.42%
ROT3/CYP90C1
18
0.42%
DFR
17
0.39%
CPD/CYP90A1
17
0.39%
CHS
15
0.35%
CPR
15
0.35%
CYP51G1
15
0.35%
CNMT
11
0.26%
ISY
11
0.26%
ANS/LDOX
11
0.26%
CYP719
10
0.23%
AACT
10
0.23%
FPPS
10
0.23%
MPO
9
0.21%
CCoAOMT
9
0.21%
DXS
9
0.21%
GGPPS
9
0.21%
CYP80B1
7
0.16%
CHI
7
0.16%
HPPR
7
0.16%
SQS/FDFT1
6
0.14%
HYD1
5
0.12%
HMGR
5
0.12%
MVD
5
0.12%
HMGS
5
0.12%
TYDC_DDC
4
0.09%
DET2
4
0.09%
SMO1/SMO2
4
0.09%
MCT/IspD
4
0.09%
ADC
3
0.07%
FK
3
0.07%
MVK
3
0.07%
PMK
3
0.07%
TDC
2
0.05%
CPI1
2
0.05%
DWF5
2
0.05%
DWF7
2
0.05%
DWF1
2
0.05%
IDI
2
0.05%
MDS/IspF
2
0.05%
DXR
2
0.05%
CMK/IspE
2
0.05%
ODC
1
0.02%
XMT_MXMT_DXMT
1
0.02%
CYP80F1
1
0.02%
FLS
1
0.02%
HDR/IspH
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 526 | 19 | BAHD (204) | View species results |
| Alkaloid pathway | 423 | 24 | 7DLGT (89) | View species results |
| Phenylpropanoid pathway | 360 | 11 | POD (137) | View species results |
| Flavonoid pathway | 229 | 11 | UFGT (147) | View species results |
| Rosmarinic acid pathway | 164 | 7 | C4H (64) | View species results |
| Steroid pathway | 116 | 14 | CAS (46) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1603 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 337 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| PYcom06G0009880.1 | Alkaloid | PMT | low | borderline |
| PYcom06G0012260.1 | Alkaloid | PMT | medium | borderline |
| PYcom07G0006480.1 | Alkaloid | PMT | low | borderline |
| PYcom07G0006490.1 | Alkaloid | PMT | low | borderline |
| PYcom07G0021130.1 | Alkaloid | PMT | medium | borderline |
| PYcom08G0004890.1 | Alkaloid | PMT | medium | pass |
| PYcom09G0011430.1 | Alkaloid | PMT | low | borderline |
| PYcom09G0011640.1 | Alkaloid | PMT | medium | pass |
| PYcom12G0002820.1 | Alkaloid | PMT | medium | pass |
| PYcom13G0006850.1 | Alkaloid | PMT | medium | borderline |
| PYcom13G0014170.1 | Alkaloid | PMT | medium | pass |
| PYcom15G0000100.1 | Alkaloid | PMT | low | borderline |
| PYcom15G0004290.1 | Alkaloid | PMT | medium | pass |
| PYcom16G0006900.1 | Alkaloid | PMT | medium | borderline |
| PYcom16G0014070.1 | Alkaloid | PMT | low | borderline |
| PYcom16G0014870.1 | Alkaloid | PMT | low | borderline |
| PYcom17G0000570.1 | Alkaloid | PMT | medium | pass |
| PYcom17G0018110.1 | Alkaloid | PMT | low | borderline |
| PYcomSuperScaffold_1110000530.1 | Alkaloid | PMT | low | borderline |
| PYcom01G0008270.1 | Alkaloid | PYKS | low | borderline |
| PYcom01G0011090.1 | Alkaloid | PYKS | low | borderline |
| PYcom04G0000300.1 | Alkaloid | PYKS | high | pass |
| PYcom04G0000310.1 | Alkaloid | PYKS | medium | pass |
| PYcom04G0000340.1 | Alkaloid | PYKS | high | pass |
| PYcom05G0002160.1 | Alkaloid | PYKS | low | borderline |
| PYcom05G0004720.1 | Alkaloid | PYKS | low | borderline |
| PYcom06G0004420.1 | Alkaloid | PYKS | low | borderline |
| PYcom07G0006690.1 | Alkaloid | PYKS | high | pass |
| PYcom07G0011910.1 | Alkaloid | PYKS | low | borderline |
| PYcom07G0013860.1 | Alkaloid | PYKS | low | borderline |
| PYcom08G0003290.1 | Alkaloid | PYKS | low | borderline |
| PYcom08G0009520.1 | Alkaloid | PYKS | low | borderline |
| PYcom10G0002130.1 | Alkaloid | PYKS | low | borderline |
| PYcom10G0004980.1 | Alkaloid | PYKS | low | borderline |
| PYcom13G0003270.1 | Alkaloid | PYKS | low | borderline |
| PYcom13G0003290.1 | Alkaloid | PYKS | low | borderline |
| PYcom13G0008890.1 | Alkaloid | PYKS | high | pass |
| PYcom13G0008900.1 | Alkaloid | PYKS | medium | pass |
| PYcom13G0015260.1 | Alkaloid | PYKS | low | borderline |
| PYcom15G0001980.1 | Alkaloid | PYKS | low | borderline |
| PYcom15G0003930.1 | Alkaloid | PYKS | low | borderline |
| PYcom15G0009340.1 | Alkaloid | PYKS | low | borderline |
| PYcom15G0010390.1 | Alkaloid | PYKS | medium | pass |
| PYcom15G0010400.1 | Alkaloid | PYKS | high | pass |
| PYcom15G0010410.1 | Alkaloid | PYKS | high | pass |
| PYcom15G0010420.1 | Alkaloid | PYKS | medium | pass |
| PYcom15G0010430.1 | Alkaloid | PYKS | high | pass |
| PYcom15G0014100.1 | Alkaloid | PYKS | low | borderline |
| PYcom16G0012310.1 | Alkaloid | PYKS | low | borderline |
| PYcomSuperScaffold_4200005580.1 | Alkaloid | PYKS | medium | pass |