PlantSME Plant secondary metabolism enzyme database

Racomitrium nitidulum (racomitrium_nitidulum)

Imported from atlas release summary for Racomitrium nitidulum.

688
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.31% Terpenoid pathway 23.11% Alkaloid pathway 21.8% Flavonoid pathway 12.94% Rosmarinic acid pathway 9.74% Steroid pathway 6.1%
Family Distribution
BAHD 6.6% C4H 6.5% C3'H/CYP98A 5.57% POD 5.29% 4CL 5.24% CYP76 3.93% NMT 3.33% IFS 3.22%
Other Families 60.32%
More Families (95)
PAL 57 3.11% STR 45 2.46% IFR 44 2.4% T3O 42 2.29% PYKS 38 2.07% DWF4/CYP90B1 38 2.07% GS 35 1.91% BR6OX2/CYP85A2 35 1.91% F3H 33 1.8% F3'H/CYP75B 33 1.8% UGT 32 1.75% CODM/T6ODM 29 1.58% CHS 29 1.58% IO 27 1.47% 7DLGT 25 1.36% UFGT 24 1.31% SMT1/SMT2/SMT3 24 1.31% CAD 23 1.26% TRI/TRII 20 1.09% LAC 20 1.09% COMT 18 0.98% CYP71 18 0.98% G8O/G8H 16 0.87% T16H 16 0.87% HCT 16 0.87% RAS 14 0.76% SLS 13 0.71% CSE 13 0.71% CAS 13 0.71% SGD 12 0.66% COR 12 0.66% FNS 11 0.6% F3'5'H/CYP75A 11 0.6% BR6OX1/CYP85A1 11 0.6% 7DLH 10 0.55% 16OMT 9 0.49% H6H 9 0.49% PMT 9 0.49% 8HGO 9 0.49% CPD/CYP90A1 9 0.49% NCS 8 0.44% ANR 8 0.44% SQS/FDFT1 8 0.44% AACT 8 0.44% CNMT 7 0.38% F5H/CYP84A 7 0.38% TDC 6 0.33% CCR 6 0.33% TAT 6 0.33% MVK 6 0.33% FPPS 6 0.33% CYP719 5 0.27% LAMT 5 0.27% MPO 5 0.27% DFR 5 0.27% CPR 5 0.27% ROT3/CYP90C1 5 0.27% CYP90D1 5 0.27% MVD 5 0.27% GGPPS 5 0.27% ADC 4 0.22% 6OMT_4OMT_SOMT 4 0.22% CYP80B1 4 0.22% ANS/LDOX 4 0.22% HPPR 4 0.22% DWF5 4 0.22% SMO1/SMO2 4 0.22% MCT/IspD 4 0.22% BBE 3 0.16% CHI 3 0.16% CCoAOMT 3 0.16% DET2 3 0.16% SQE 3 0.16% HMGS 3 0.16% TPS 3 0.16% IDI 3 0.16% TYDC_DDC 2 0.11% GES 2 0.11% FLS 2 0.11% MDS/IspF 2 0.11% DXR 2 0.11% HDS/IspG 2 0.11% HMGR 2 0.11% ISY 1 0.05% CPI1 1 0.05% DWF1 1 0.05% FK 1 0.05% HYD1 1 0.05% DWF7 1 0.05% CYP51G1 1 0.05% GPPS 1 0.05% PMK 1 0.05% HDR/IspH 1 0.05% DXS 1 0.05% CMK/IspE 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 181 11 POD (87) View species results
Terpenoid pathway 159 19 BAHD (72) View species results
Alkaloid pathway 150 16 PYKS (26) View species results
Flavonoid pathway 89 10 CHS (26) View species results
Rosmarinic acid pathway 67 7 C4H (21) View species results
Steroid pathway 42 12 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 658 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 151 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
Rnitcontig_1180009500 Flavonoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Rnitcontig_1280016140 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Rnitcontig_2120042810 Flavonoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Rnitcontig_2200051380 Flavonoid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
Rnitcontig_2350058840 Flavonoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Rnitcontig_2560066520 Flavonoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Rnitcontig_3520097720 Flavonoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Rnitcontig_3920115800 Flavonoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Rnitcontig_4080127410 Flavonoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Rnitcontig_4280130040 Flavonoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Rnitcontig_4290130630 Flavonoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Rnitcontig_4290130640 Flavonoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Rnitcontig_4380132070 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Rnitcontig_4670137340 Flavonoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Rnitcontig_4670137780 Flavonoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Rnitcontig_5030152450 Flavonoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Rnitcontig_5030152460 Flavonoid 4CL low borderline 4CL__00004__sp_O24146_4CL2_TOBAC
Rnitcontig_5110160670 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Rnitcontig_5110160680 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Rnitcontig_5260168000 Flavonoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Rnitcontig_5290171430 Flavonoid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
Rnitcontig_5730189260 Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Rnitcontig_6330200480 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Rnitcontig_6330201150 Flavonoid 4CL low borderline 4CL__00008__sp_Q42982_4CL2_ORYSJ
Rnitcontig_6680210600 Flavonoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Rnitcontig_7040231880 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Rnitcontig_7210238340 Flavonoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Rnitcontig_7710254570 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Rnitcontig_7850257360 Flavonoid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
Rnitcontig_8300276070 Flavonoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Rnitcontig_8320277610 Flavonoid 4CL low borderline 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ
Rnitcontig_940305850 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Rnitcontig_1180009500 Phenylpropanoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Rnitcontig_1280016140 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Rnitcontig_2120042810 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Rnitcontig_2200051380 Phenylpropanoid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
Rnitcontig_2350058840 Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Rnitcontig_2560066520 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Rnitcontig_3520097720 Phenylpropanoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Rnitcontig_3920115800 Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Rnitcontig_4080127410 Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Rnitcontig_4280130040 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Rnitcontig_4290130630 Phenylpropanoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Rnitcontig_4290130640 Phenylpropanoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Rnitcontig_4380132070 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Rnitcontig_4670137340 Phenylpropanoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Rnitcontig_4670137780 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Rnitcontig_5030152450 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Rnitcontig_5030152460 Phenylpropanoid 4CL low borderline 4CL__00004__sp_O24146_4CL2_TOBAC
Rnitcontig_5110160670 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY