PlantSME Plant secondary metabolism enzyme database

Racomitrium nitidulum (racomitrium_nitidulum)

Imported from atlas release summary for Racomitrium nitidulum.

688
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.31% Terpenoid pathway 23.11% Alkaloid pathway 21.8% Flavonoid pathway 12.94% Rosmarinic acid pathway 9.74% Steroid pathway 6.1%
Family Distribution
BAHD 6.6% C4H 6.5% C3'H/CYP98A 5.57% POD 5.29% 4CL 5.24% CYP76 3.93% NMT 3.33% IFS 3.22%
Other Families 60.32%
More Families (95)
PAL 57 3.11% STR 45 2.46% IFR 44 2.4% T3O 42 2.29% PYKS 38 2.07% DWF4/CYP90B1 38 2.07% GS 35 1.91% BR6OX2/CYP85A2 35 1.91% F3H 33 1.8% F3'H/CYP75B 33 1.8% UGT 32 1.75% CODM/T6ODM 29 1.58% CHS 29 1.58% IO 27 1.47% 7DLGT 25 1.36% UFGT 24 1.31% SMT1/SMT2/SMT3 24 1.31% CAD 23 1.26% TRI/TRII 20 1.09% LAC 20 1.09% COMT 18 0.98% CYP71 18 0.98% G8O/G8H 16 0.87% T16H 16 0.87% HCT 16 0.87% RAS 14 0.76% SLS 13 0.71% CSE 13 0.71% CAS 13 0.71% SGD 12 0.66% COR 12 0.66% FNS 11 0.6% F3'5'H/CYP75A 11 0.6% BR6OX1/CYP85A1 11 0.6% 7DLH 10 0.55% 16OMT 9 0.49% H6H 9 0.49% PMT 9 0.49% 8HGO 9 0.49% CPD/CYP90A1 9 0.49% NCS 8 0.44% ANR 8 0.44% SQS/FDFT1 8 0.44% AACT 8 0.44% CNMT 7 0.38% F5H/CYP84A 7 0.38% TDC 6 0.33% CCR 6 0.33% TAT 6 0.33% MVK 6 0.33% FPPS 6 0.33% CYP719 5 0.27% LAMT 5 0.27% MPO 5 0.27% DFR 5 0.27% CPR 5 0.27% ROT3/CYP90C1 5 0.27% CYP90D1 5 0.27% MVD 5 0.27% GGPPS 5 0.27% ADC 4 0.22% 6OMT_4OMT_SOMT 4 0.22% CYP80B1 4 0.22% ANS/LDOX 4 0.22% HPPR 4 0.22% DWF5 4 0.22% SMO1/SMO2 4 0.22% MCT/IspD 4 0.22% BBE 3 0.16% CHI 3 0.16% CCoAOMT 3 0.16% DET2 3 0.16% SQE 3 0.16% HMGS 3 0.16% TPS 3 0.16% IDI 3 0.16% TYDC_DDC 2 0.11% GES 2 0.11% FLS 2 0.11% MDS/IspF 2 0.11% DXR 2 0.11% HDS/IspG 2 0.11% HMGR 2 0.11% ISY 1 0.05% CPI1 1 0.05% DWF1 1 0.05% FK 1 0.05% HYD1 1 0.05% DWF7 1 0.05% CYP51G1 1 0.05% GPPS 1 0.05% PMK 1 0.05% HDR/IspH 1 0.05% DXS 1 0.05% CMK/IspE 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 181 11 POD (87) View species results
Terpenoid pathway 159 19 BAHD (72) View species results
Alkaloid pathway 150 16 PYKS (26) View species results
Flavonoid pathway 89 10 CHS (26) View species results
Rosmarinic acid pathway 67 7 C4H (21) View species results
Steroid pathway 42 12 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 658 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 151 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
Rnitcontig_1190013560 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Rnitcontig_2220055020 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Rnitcontig_2890081180 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Rnitcontig_3080084480 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Rnitcontig_3080084570 Phenylpropanoid CAD low borderline CAD__00004__sp_B5LAT8_CAD1_CAPAN
Rnitcontig_3650100950 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Rnitcontig_4810141540 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Rnitcontig_5280170110 Phenylpropanoid CAD medium pass CAD__00007__sp_O24562_CADH_MAIZE
Rnitcontig_530172900 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Rnitcontig_5380181480 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
Rnitcontig_6210198690 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Rnitcontig_6660208390 Phenylpropanoid CAD low borderline CAD__00007__sp_O24562_CADH_MAIZE
Rnitcontig_7660252170 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Rnitcontig_7710254610 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Rnitcontig_8130265890 Phenylpropanoid CAD low borderline CAD__00007__sp_O24562_CADH_MAIZE
Rnitcontig_820271880 Phenylpropanoid CAD low borderline CAD__00007__sp_O24562_CADH_MAIZE
Rnitcontig_8300276100 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Rnitcontig_840283910 Phenylpropanoid CAD low borderline CAD__00004__sp_B5LAT8_CAD1_CAPAN
Rnitcontig_8480286010 Phenylpropanoid CAD low borderline CAD__00008__sp_O49482_CADH5_ARATH
Rnitcontig_8500287300 Phenylpropanoid CAD low borderline CAD__00014__sp_Q2KNL5_CADH1_OCIBA
Rnitcontig_850286750 Phenylpropanoid CAD low borderline CAD__00007__sp_O24562_CADH_MAIZE
Rnitcontig_8530290090 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Rnitcontig_880300510 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR