Racomitrium nitidulum (racomitrium_nitidulum)
Imported from atlas release summary for Racomitrium nitidulum.
688
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
688
Candidate Genes
BAHD
6.6%
C4H
6.5%
C3'H/CYP98A
5.57%
POD
5.29%
4CL
5.24%
CYP76
3.93%
NMT
3.33%
IFS
3.22%
Other Families
60.32%
More Families (95)
PAL
57
3.11%
STR
45
2.46%
IFR
44
2.4%
T3O
42
2.29%
PYKS
38
2.07%
DWF4/CYP90B1
38
2.07%
GS
35
1.91%
BR6OX2/CYP85A2
35
1.91%
F3H
33
1.8%
F3'H/CYP75B
33
1.8%
UGT
32
1.75%
CODM/T6ODM
29
1.58%
CHS
29
1.58%
IO
27
1.47%
7DLGT
25
1.36%
UFGT
24
1.31%
SMT1/SMT2/SMT3
24
1.31%
CAD
23
1.26%
TRI/TRII
20
1.09%
LAC
20
1.09%
COMT
18
0.98%
CYP71
18
0.98%
G8O/G8H
16
0.87%
T16H
16
0.87%
HCT
16
0.87%
RAS
14
0.76%
SLS
13
0.71%
CSE
13
0.71%
CAS
13
0.71%
SGD
12
0.66%
COR
12
0.66%
FNS
11
0.6%
F3'5'H/CYP75A
11
0.6%
BR6OX1/CYP85A1
11
0.6%
7DLH
10
0.55%
16OMT
9
0.49%
H6H
9
0.49%
PMT
9
0.49%
8HGO
9
0.49%
CPD/CYP90A1
9
0.49%
NCS
8
0.44%
ANR
8
0.44%
SQS/FDFT1
8
0.44%
AACT
8
0.44%
CNMT
7
0.38%
F5H/CYP84A
7
0.38%
TDC
6
0.33%
CCR
6
0.33%
TAT
6
0.33%
MVK
6
0.33%
FPPS
6
0.33%
CYP719
5
0.27%
LAMT
5
0.27%
MPO
5
0.27%
DFR
5
0.27%
CPR
5
0.27%
ROT3/CYP90C1
5
0.27%
CYP90D1
5
0.27%
MVD
5
0.27%
GGPPS
5
0.27%
ADC
4
0.22%
6OMT_4OMT_SOMT
4
0.22%
CYP80B1
4
0.22%
ANS/LDOX
4
0.22%
HPPR
4
0.22%
DWF5
4
0.22%
SMO1/SMO2
4
0.22%
MCT/IspD
4
0.22%
BBE
3
0.16%
CHI
3
0.16%
CCoAOMT
3
0.16%
DET2
3
0.16%
SQE
3
0.16%
HMGS
3
0.16%
TPS
3
0.16%
IDI
3
0.16%
TYDC_DDC
2
0.11%
GES
2
0.11%
FLS
2
0.11%
MDS/IspF
2
0.11%
DXR
2
0.11%
HDS/IspG
2
0.11%
HMGR
2
0.11%
ISY
1
0.05%
CPI1
1
0.05%
DWF1
1
0.05%
FK
1
0.05%
HYD1
1
0.05%
DWF7
1
0.05%
CYP51G1
1
0.05%
GPPS
1
0.05%
PMK
1
0.05%
HDR/IspH
1
0.05%
DXS
1
0.05%
CMK/IspE
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 181 | 11 | POD (87) | View species results |
| Terpenoid pathway | 159 | 19 | BAHD (72) | View species results |
| Alkaloid pathway | 150 | 16 | PYKS (26) | View species results |
| Flavonoid pathway | 89 | 10 | CHS (26) | View species results |
| Rosmarinic acid pathway | 67 | 7 | C4H (21) | View species results |
| Steroid pathway | 42 | 12 | CAS (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 658 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 151 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Rnitcontig_1090003870 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_1190011070 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_1410027430 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_1890034670 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rnitcontig_2120043650 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_2170046220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_2330056860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_2330058430 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_3270088950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_3520097640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_3760107460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_4830144330 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_4830144340 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_4850144970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_4900147000 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_4900147010 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_5010150860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_5130163170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_5380181300 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_5390181970 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_550184970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_5900192280 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_5900192300 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_6210198710 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rnitcontig_6420201910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_6460203260 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_6600206450 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rnitcontig_660206230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_6970220570 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rnitcontig_7040230820 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rnitcontig_7050232940 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rnitcontig_7060234990 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_7060235060 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_7500247340 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_750246770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_7620251000 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_7710255230 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rnitcontig_8360280850 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_8480286000 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rnitcontig_8500287700 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_8530289940 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_8550294660 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_8560296690 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_870299850 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rnitcontig_880300640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |