Racomitrium nitidulum (racomitrium_nitidulum)
Imported from atlas release summary for Racomitrium nitidulum.
1005
Candidate Protein Records
688
Pathway-Level Records
1832
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1832
Family-Level Calls
BAHD
6.6%
C4H
6.5%
C3'H/CYP98A
5.57%
POD
5.29%
4CL
5.24%
CYP76
3.93%
NMT
3.33%
IFS
3.22%
Other Families
60.32%
More Families (95)
PAL
57
3.11%
STR
45
2.46%
IFR
44
2.4%
T3O
42
2.29%
PYKS
38
2.07%
DWF4/CYP90B1
38
2.07%
GS
35
1.91%
BR6OX2/CYP85A2
35
1.91%
F3H
33
1.8%
F3'H/CYP75B
33
1.8%
UGT
32
1.75%
CODM/T6ODM
29
1.58%
CHS
29
1.58%
IO
27
1.47%
7DLGT
25
1.36%
UFGT
24
1.31%
SMT1/SMT2/SMT3
24
1.31%
CAD
23
1.26%
TRI/TRII
20
1.09%
LAC
20
1.09%
COMT
18
0.98%
CYP71
18
0.98%
G8O/G8H
16
0.87%
T16H
16
0.87%
HCT
16
0.87%
RAS
14
0.76%
SLS
13
0.71%
CSE
13
0.71%
CAS
13
0.71%
SGD
12
0.66%
COR
12
0.66%
FNS
11
0.6%
F3'5'H/CYP75A
11
0.6%
BR6OX1/CYP85A1
11
0.6%
7DLH
10
0.55%
16OMT
9
0.49%
H6H
9
0.49%
PMT
9
0.49%
8HGO
9
0.49%
CPD/CYP90A1
9
0.49%
NCS
8
0.44%
ANR
8
0.44%
SQS/FDFT1
8
0.44%
AACT
8
0.44%
CNMT
7
0.38%
F5H/CYP84A
7
0.38%
TDC
6
0.33%
CCR
6
0.33%
TAT
6
0.33%
MVK
6
0.33%
FPPS
6
0.33%
CYP719
5
0.27%
LAMT
5
0.27%
MPO
5
0.27%
DFR
5
0.27%
CPR
5
0.27%
ROT3/CYP90C1
5
0.27%
CYP90D1
5
0.27%
MVD
5
0.27%
GGPPS
5
0.27%
ADC
4
0.22%
6OMT_4OMT_SOMT
4
0.22%
CYP80B1
4
0.22%
ANS/LDOX
4
0.22%
HPPR
4
0.22%
DWF5
4
0.22%
SMO1/SMO2
4
0.22%
MCT/IspD
4
0.22%
BBE
3
0.16%
CHI
3
0.16%
CCoAOMT
3
0.16%
DET2
3
0.16%
SQE
3
0.16%
HMGS
3
0.16%
TPS
3
0.16%
IDI
3
0.16%
TYDC_DDC
2
0.11%
GES
2
0.11%
FLS
2
0.11%
MDS/IspF
2
0.11%
DXR
2
0.11%
HDS/IspG
2
0.11%
HMGR
2
0.11%
ISY
1
0.05%
CPI1
1
0.05%
DWF1
1
0.05%
FK
1
0.05%
HYD1
1
0.05%
DWF7
1
0.05%
CYP51G1
1
0.05%
GPPS
1
0.05%
PMK
1
0.05%
HDR/IspH
1
0.05%
DXS
1
0.05%
CMK/IspE
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 181 | 11 | POD (87) | View species results |
| Terpenoid pathway | 159 | 19 | BAHD (72) | View species results |
| Alkaloid pathway | 150 | 16 | PYKS (26) | View species results |
| Flavonoid pathway | 89 | 10 | CHS (26) | View species results |
| Rosmarinic acid pathway | 67 | 7 | C4H (21) | View species results |
| Steroid pathway | 42 | 12 | CAS (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 658 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 151 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Rnitcontig_6210198740 | Alkaloid | T3O | low | borderline |
| Rnitcontig_6490203840 | Alkaloid | T3O | medium | borderline |
| Rnitcontig_6490203880 | Alkaloid | T3O | low | borderline |
| Rnitcontig_6630206560 | Alkaloid | T3O | medium | pass |
| Rnitcontig_6630206570 | Alkaloid | T3O | medium | pass |
| Rnitcontig_6640207480 | Alkaloid | T3O | medium | borderline |
| Rnitcontig_6770212990 | Alkaloid | T3O | medium | pass |
| Rnitcontig_7030225630 | Alkaloid | T3O | low | borderline |
| Rnitcontig_7060235700 | Alkaloid | T3O | medium | pass |
| Rnitcontig_7060235770 | Alkaloid | T3O | medium | pass |
| Rnitcontig_7060236140 | Alkaloid | T3O | medium | pass |
| Rnitcontig_7620250690 | Alkaloid | T3O | medium | borderline |
| Rnitcontig_7940261010 | Alkaloid | T3O | medium | borderline |
| Rnitcontig_8060262970 | Alkaloid | T3O | medium | pass |
| Rnitcontig_8330278520 | Alkaloid | T3O | low | borderline |
| Rnitcontig_2620068280 | Alkaloid | TDC | low | borderline |
| Rnitcontig_5390182150 | Alkaloid | TDC | low | borderline |
| Rnitcontig_5730189620 | Alkaloid | TDC | medium | borderline |
| Rnitcontig_8130265820 | Alkaloid | TDC | low | borderline |
| Rnitcontig_8550295230 | Alkaloid | TDC | low | borderline |
| Rnitcontig_920303790 | Alkaloid | TDC | low | borderline |
| Rnitcontig_1150007560 | Alkaloid | TRI/TRII | medium | pass |
| Rnitcontig_1920036520 | Alkaloid | TRI/TRII | low | borderline |
| Rnitcontig_1960038400 | Alkaloid | TRI/TRII | low | borderline |
| Rnitcontig_2890081110 | Alkaloid | TRI/TRII | low | borderline |
| Rnitcontig_2890081120 | Alkaloid | TRI/TRII | low | borderline |
| Rnitcontig_3520097290 | Alkaloid | TRI/TRII | medium | pass |
| Rnitcontig_3750106640 | Alkaloid | TRI/TRII | medium | pass |
| Rnitcontig_400119520 | Alkaloid | TRI/TRII | medium | pass |
| Rnitcontig_5370176720 | Alkaloid | TRI/TRII | medium | pass |
| Rnitcontig_6200198390 | Alkaloid | TRI/TRII | low | borderline |
| Rnitcontig_6210198540 | Alkaloid | TRI/TRII | low | borderline |
| Rnitcontig_6210198560 | Alkaloid | TRI/TRII | low | borderline |
| Rnitcontig_6210198580 | Alkaloid | TRI/TRII | low | borderline |
| Rnitcontig_6670210140 | Alkaloid | TRI/TRII | medium | pass |
| Rnitcontig_6850213890 | Alkaloid | TRI/TRII | medium | pass |
| Rnitcontig_7040231250 | Alkaloid | TRI/TRII | medium | pass |
| Rnitcontig_7050234690 | Alkaloid | TRI/TRII | medium | pass |
| Rnitcontig_8300276120 | Alkaloid | TRI/TRII | medium | pass |
| Rnitcontig_8320277430 | Alkaloid | TRI/TRII | medium | pass |
| Rnitcontig_8540292020 | Alkaloid | TRI/TRII | medium | pass |
| Rnitcontig_2650072490 | Alkaloid | TYDC_DDC | medium | borderline |
| Rnitcontig_5730189610 | Alkaloid | TYDC_DDC | medium | borderline |
| Rnitcontig_1180009500 | Flavonoid | 4CL | low | borderline |
| Rnitcontig_1280016140 | Flavonoid | 4CL | medium | pass |
| Rnitcontig_2120042810 | Flavonoid | 4CL | low | borderline |
| Rnitcontig_2200051380 | Flavonoid | 4CL | low | borderline |
| Rnitcontig_2350058840 | Flavonoid | 4CL | low | borderline |
| Rnitcontig_2560066520 | Flavonoid | 4CL | low | borderline |
| Rnitcontig_3520097720 | Flavonoid | 4CL | low | borderline |