PlantSME Plant secondary metabolism enzyme database

Racomitrium nitidulum (racomitrium_nitidulum)

Imported from atlas release summary for Racomitrium nitidulum.

688
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.31% Terpenoid pathway 23.11% Alkaloid pathway 21.8% Flavonoid pathway 12.94% Rosmarinic acid pathway 9.74% Steroid pathway 6.1%
Family Distribution
BAHD 6.6% C4H 6.5% C3'H/CYP98A 5.57% POD 5.29% 4CL 5.24% CYP76 3.93% NMT 3.33% IFS 3.22%
Other Families 60.32%
More Families (95)
PAL 57 3.11% STR 45 2.46% IFR 44 2.4% T3O 42 2.29% PYKS 38 2.07% DWF4/CYP90B1 38 2.07% GS 35 1.91% BR6OX2/CYP85A2 35 1.91% F3H 33 1.8% F3'H/CYP75B 33 1.8% UGT 32 1.75% CODM/T6ODM 29 1.58% CHS 29 1.58% IO 27 1.47% 7DLGT 25 1.36% UFGT 24 1.31% SMT1/SMT2/SMT3 24 1.31% CAD 23 1.26% TRI/TRII 20 1.09% LAC 20 1.09% COMT 18 0.98% CYP71 18 0.98% G8O/G8H 16 0.87% T16H 16 0.87% HCT 16 0.87% RAS 14 0.76% SLS 13 0.71% CSE 13 0.71% CAS 13 0.71% SGD 12 0.66% COR 12 0.66% FNS 11 0.6% F3'5'H/CYP75A 11 0.6% BR6OX1/CYP85A1 11 0.6% 7DLH 10 0.55% 16OMT 9 0.49% H6H 9 0.49% PMT 9 0.49% 8HGO 9 0.49% CPD/CYP90A1 9 0.49% NCS 8 0.44% ANR 8 0.44% SQS/FDFT1 8 0.44% AACT 8 0.44% CNMT 7 0.38% F5H/CYP84A 7 0.38% TDC 6 0.33% CCR 6 0.33% TAT 6 0.33% MVK 6 0.33% FPPS 6 0.33% CYP719 5 0.27% LAMT 5 0.27% MPO 5 0.27% DFR 5 0.27% CPR 5 0.27% ROT3/CYP90C1 5 0.27% CYP90D1 5 0.27% MVD 5 0.27% GGPPS 5 0.27% ADC 4 0.22% 6OMT_4OMT_SOMT 4 0.22% CYP80B1 4 0.22% ANS/LDOX 4 0.22% HPPR 4 0.22% DWF5 4 0.22% SMO1/SMO2 4 0.22% MCT/IspD 4 0.22% BBE 3 0.16% CHI 3 0.16% CCoAOMT 3 0.16% DET2 3 0.16% SQE 3 0.16% HMGS 3 0.16% TPS 3 0.16% IDI 3 0.16% TYDC_DDC 2 0.11% GES 2 0.11% FLS 2 0.11% MDS/IspF 2 0.11% DXR 2 0.11% HDS/IspG 2 0.11% HMGR 2 0.11% ISY 1 0.05% CPI1 1 0.05% DWF1 1 0.05% FK 1 0.05% HYD1 1 0.05% DWF7 1 0.05% CYP51G1 1 0.05% GPPS 1 0.05% PMK 1 0.05% HDR/IspH 1 0.05% DXS 1 0.05% CMK/IspE 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 181 11 POD (87) View species results
Terpenoid pathway 159 19 BAHD (72) View species results
Alkaloid pathway 150 16 PYKS (26) View species results
Flavonoid pathway 89 10 CHS (26) View species results
Rosmarinic acid pathway 67 7 C4H (21) View species results
Steroid pathway 42 12 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 658 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 151 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Rnitcontig_6770212280 Steroid SMT1/SMT2/SMT3 medium pass
Rnitcontig_6960218170 Steroid SMT1/SMT2/SMT3 low borderline
Rnitcontig_8120263610 Steroid SMT1/SMT2/SMT3 medium pass
Rnitcontig_8130268180 Steroid SMT1/SMT2/SMT3 low borderline
Rnitcontig_8360281300 Steroid SMT1/SMT2/SMT3 low borderline
Rnitcontig_840284020 Steroid SMT1/SMT2/SMT3 low borderline
Rnitcontig_8530289360 Steroid SMT1/SMT2/SMT3 low borderline
Rnitcontig_2200051180 Steroid SQE medium pass
Rnitcontig_2680076960 Steroid SQE medium pass
Rnitcontig_6960219940 Steroid SQE low borderline
Rnitcontig_1410026430 Steroid SQS/FDFT1 low borderline
Rnitcontig_2170046260 Steroid SQS/FDFT1 high pass
Rnitcontig_2420060150 Steroid SQS/FDFT1 high pass
Rnitcontig_2460062120 Steroid SQS/FDFT1 medium pass
Rnitcontig_2640069730 Steroid SQS/FDFT1 medium pass
Rnitcontig_3760108810 Steroid SQS/FDFT1 high pass
Rnitcontig_7480245310 Steroid SQS/FDFT1 medium pass
Rnitcontig_8560298340 Steroid SQS/FDFT1 low borderline