PlantSME Plant secondary metabolism enzyme database

Racomitrium nitidulum (racomitrium_nitidulum)

Imported from atlas release summary for Racomitrium nitidulum.

1005
Candidate Protein Records
688
Pathway-Level Records
1832
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Phenylpropanoid pathway 26.31% Terpenoid pathway 23.11% Alkaloid pathway 21.8% Flavonoid pathway 12.94% Rosmarinic acid pathway 9.74% Steroid pathway 6.1%
Family Distribution
BAHD 6.6% C4H 6.5% C3'H/CYP98A 5.57% POD 5.29% 4CL 5.24% CYP76 3.93% NMT 3.33% IFS 3.22%
Other Families 60.32%
More Families (95)
PAL 57 3.11% STR 45 2.46% IFR 44 2.4% T3O 42 2.29% PYKS 38 2.07% DWF4/CYP90B1 38 2.07% GS 35 1.91% BR6OX2/CYP85A2 35 1.91% F3H 33 1.8% F3'H/CYP75B 33 1.8% UGT 32 1.75% CODM/T6ODM 29 1.58% CHS 29 1.58% IO 27 1.47% 7DLGT 25 1.36% UFGT 24 1.31% SMT1/SMT2/SMT3 24 1.31% CAD 23 1.26% TRI/TRII 20 1.09% LAC 20 1.09% COMT 18 0.98% CYP71 18 0.98% G8O/G8H 16 0.87% T16H 16 0.87% HCT 16 0.87% RAS 14 0.76% SLS 13 0.71% CSE 13 0.71% CAS 13 0.71% SGD 12 0.66% COR 12 0.66% FNS 11 0.6% F3'5'H/CYP75A 11 0.6% BR6OX1/CYP85A1 11 0.6% 7DLH 10 0.55% 16OMT 9 0.49% H6H 9 0.49% PMT 9 0.49% 8HGO 9 0.49% CPD/CYP90A1 9 0.49% NCS 8 0.44% ANR 8 0.44% SQS/FDFT1 8 0.44% AACT 8 0.44% CNMT 7 0.38% F5H/CYP84A 7 0.38% TDC 6 0.33% CCR 6 0.33% TAT 6 0.33% MVK 6 0.33% FPPS 6 0.33% CYP719 5 0.27% LAMT 5 0.27% MPO 5 0.27% DFR 5 0.27% CPR 5 0.27% ROT3/CYP90C1 5 0.27% CYP90D1 5 0.27% MVD 5 0.27% GGPPS 5 0.27% ADC 4 0.22% 6OMT_4OMT_SOMT 4 0.22% CYP80B1 4 0.22% ANS/LDOX 4 0.22% HPPR 4 0.22% DWF5 4 0.22% SMO1/SMO2 4 0.22% MCT/IspD 4 0.22% BBE 3 0.16% CHI 3 0.16% CCoAOMT 3 0.16% DET2 3 0.16% SQE 3 0.16% HMGS 3 0.16% TPS 3 0.16% IDI 3 0.16% TYDC_DDC 2 0.11% GES 2 0.11% FLS 2 0.11% MDS/IspF 2 0.11% DXR 2 0.11% HDS/IspG 2 0.11% HMGR 2 0.11% ISY 1 0.05% CPI1 1 0.05% DWF1 1 0.05% FK 1 0.05% HYD1 1 0.05% DWF7 1 0.05% CYP51G1 1 0.05% GPPS 1 0.05% PMK 1 0.05% HDR/IspH 1 0.05% DXS 1 0.05% CMK/IspE 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 181 11 POD (87) View species results
Terpenoid pathway 159 19 BAHD (72) View species results
Alkaloid pathway 150 16 PYKS (26) View species results
Flavonoid pathway 89 10 CHS (26) View species results
Rosmarinic acid pathway 67 7 C4H (21) View species results
Steroid pathway 42 12 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 658 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 151 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Rnitcontig_8370281970 Flavonoid PAL high pass
Rnitcontig_1140006800 Flavonoid UFGT medium pass
Rnitcontig_1150007700 Flavonoid UFGT high pass
Rnitcontig_1190011150 Flavonoid UFGT medium pass
Rnitcontig_1190011560 Flavonoid UFGT low borderline
Rnitcontig_1290017530 Flavonoid UFGT medium pass
Rnitcontig_1890035190 Flavonoid UFGT medium pass
Rnitcontig_1960038530 Flavonoid UFGT medium pass
Rnitcontig_2000040670 Flavonoid UFGT high pass
Rnitcontig_2560067060 Flavonoid UFGT medium pass
Rnitcontig_2670076170 Flavonoid UFGT medium pass
Rnitcontig_3520097340 Flavonoid UFGT medium pass
Rnitcontig_3550097970 Flavonoid UFGT medium pass
Rnitcontig_4780140190 Flavonoid UFGT medium pass
Rnitcontig_4970149180 Flavonoid UFGT medium pass
Rnitcontig_5110161020 Flavonoid UFGT medium pass
Rnitcontig_5290172470 Flavonoid UFGT medium pass
Rnitcontig_6320200330 Flavonoid UFGT medium pass
Rnitcontig_6520204310 Flavonoid UFGT high pass
Rnitcontig_6530205410 Flavonoid UFGT low borderline
Rnitcontig_6860214760 Flavonoid UFGT medium pass
Rnitcontig_7480246170 Flavonoid UFGT high pass
Rnitcontig_8410284610 Flavonoid UFGT medium pass
Rnitcontig_8530290140 Flavonoid UFGT low borderline
Rnitcontig_970306820 Flavonoid UFGT medium pass