Rheum tanguticum (rheum_tanguticum)
Imported from atlas release summary for Rheum tanguticum.
1471
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1471
Candidate Genes
C3'H/CYP98A
5.94%
C4H
5.77%
BAHD
5.09%
CYP76
4.52%
4CL
4.17%
IFS
4.03%
POD
3.76%
UGT
3.51%
Other Families
63.21%
More Families (97)
T3O
124
3.38%
7DLGT
113
3.08%
UFGT
106
2.89%
NMT
98
2.67%
DWF4/CYP90B1
87
2.37%
F3H
85
2.31%
BR6OX2/CYP85A2
79
2.15%
F3'H/CYP75B
76
2.07%
CAD
63
1.72%
PYKS
59
1.61%
STR
57
1.55%
CODM/T6ODM
56
1.53%
TPS
56
1.53%
CAS
55
1.5%
GES
51
1.39%
CYP71
50
1.36%
SMT1/SMT2/SMT3
49
1.33%
H6H
46
1.25%
CSE
43
1.17%
PAL
42
1.14%
GS
33
0.9%
TRI/TRII
31
0.84%
CHS
31
0.84%
HCT
31
0.84%
COMT
31
0.84%
SGD
30
0.82%
ANR
29
0.79%
IFR
29
0.79%
LAC
29
0.79%
RAS
29
0.79%
G8O/G8H
28
0.76%
PMT
28
0.76%
T16H
25
0.68%
CYP90D1
25
0.68%
CPD/CYP90A1
24
0.65%
IO
22
0.6%
7DLH
19
0.52%
16OMT
19
0.52%
CCR
19
0.52%
8HGO
18
0.49%
CYP719
18
0.49%
ANS/LDOX
18
0.49%
F5H/CYP84A
18
0.49%
TAT
18
0.49%
CPR
18
0.49%
SQE
15
0.41%
ROT3/CYP90C1
14
0.38%
SLS
13
0.35%
CYP51G1
13
0.35%
HMGR
12
0.33%
FPPS
12
0.33%
COR
11
0.3%
F3'5'H/CYP75A
11
0.3%
DFR
11
0.3%
SQS/FDFT1
11
0.3%
FNS
10
0.27%
CCoAOMT
10
0.27%
ISY
8
0.22%
BR6OX1/CYP85A1
8
0.22%
MVD
8
0.22%
NCS
7
0.19%
CNMT
7
0.19%
CHI
7
0.19%
SMO1/SMO2
7
0.19%
DXR
7
0.19%
BBE
6
0.16%
XMT_MXMT_DXMT
6
0.16%
HPPR
6
0.16%
HDS/IspG
6
0.16%
GGPPS
6
0.16%
CMK/IspE
5
0.14%
AACT
5
0.14%
DXS
5
0.14%
CYP80B1
4
0.11%
TYDC_DDC
4
0.11%
MPO
4
0.11%
DET2
4
0.11%
MVK
4
0.11%
HMGS
4
0.11%
LAMT
3
0.08%
TDC
3
0.08%
FK
3
0.08%
HYD1
3
0.08%
HDR/IspH
3
0.08%
IDI
3
0.08%
ODC
2
0.05%
6OMT_4OMT_SOMT
2
0.05%
FLS
2
0.05%
DWF1
2
0.05%
PMK
2
0.05%
CYP80F1
1
0.03%
ADC
1
0.03%
CPI1
1
0.03%
DWF7
1
0.03%
DWF5
1
0.03%
MDS/IspF
1
0.03%
MCT/IspD
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 440 | 19 | BAHD (137) | View species results |
| Phenylpropanoid pathway | 305 | 13 | POD (123) | View species results |
| Alkaloid pathway | 303 | 21 | NMT (50) | View species results |
| Flavonoid pathway | 184 | 12 | UFGT (92) | View species results |
| Rosmarinic acid pathway | 147 | 7 | C4H (68) | View species results |
| Steroid pathway | 92 | 13 | CAS (31) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1403 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 247 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| rheum_tanguticum_RtaG0046904.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rheum_tanguticum_RtaG0000746.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| rheum_tanguticum_RtaG0001878.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| rheum_tanguticum_RtaG0002740.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| rheum_tanguticum_RtaG0005144.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| rheum_tanguticum_RtaG0007269.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rheum_tanguticum_RtaG0007433.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| rheum_tanguticum_RtaG0008420.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| rheum_tanguticum_RtaG0008421.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00007__sp_Q42524_4CL1_ARATH |
| rheum_tanguticum_RtaG0008423.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| rheum_tanguticum_RtaG0008425.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| rheum_tanguticum_RtaG0008534.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rheum_tanguticum_RtaG0008870.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rheum_tanguticum_RtaG0008877.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rheum_tanguticum_RtaG0008879.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rheum_tanguticum_RtaG0008885.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rheum_tanguticum_RtaG0008886.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rheum_tanguticum_RtaG0009358.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| rheum_tanguticum_RtaG0009494.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| rheum_tanguticum_RtaG0010113.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rheum_tanguticum_RtaG0013327.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| rheum_tanguticum_RtaG0013329.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| rheum_tanguticum_RtaG0013330.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| rheum_tanguticum_RtaG0013917.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rheum_tanguticum_RtaG0015659.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rheum_tanguticum_RtaG0017284.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| rheum_tanguticum_RtaG0019034.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| rheum_tanguticum_RtaG0019035.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| rheum_tanguticum_RtaG0019130.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| rheum_tanguticum_RtaG0019725.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| rheum_tanguticum_RtaG0020529.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| rheum_tanguticum_RtaG0022109.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| rheum_tanguticum_RtaG0022935.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| rheum_tanguticum_RtaG0025312.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rheum_tanguticum_RtaG0025913.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rheum_tanguticum_RtaG0026209.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| rheum_tanguticum_RtaG0030220.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| rheum_tanguticum_RtaG0032529.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| rheum_tanguticum_RtaG0036975.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| rheum_tanguticum_RtaG0038973.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| rheum_tanguticum_RtaG0039126.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| rheum_tanguticum_RtaG0039240.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| rheum_tanguticum_RtaG0039526.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| rheum_tanguticum_RtaG0040831.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| rheum_tanguticum_RtaG0042725.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| rheum_tanguticum_RtaG0043147.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| rheum_tanguticum_RtaG0043721.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| rheum_tanguticum_RtaG0044823.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| rheum_tanguticum_RtaG0045748.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| rheum_tanguticum_RtaG0045994.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |