PlantSME Plant secondary metabolism enzyme database

Rheum tanguticum (rheum_tanguticum)

Imported from atlas release summary for Rheum tanguticum.

1471
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.91% Phenylpropanoid pathway 20.73% Alkaloid pathway 20.6% Flavonoid pathway 12.51% Rosmarinic acid pathway 9.99% Steroid pathway 6.25%
Family Distribution
C3'H/CYP98A 5.94% C4H 5.77% BAHD 5.09% CYP76 4.52% 4CL 4.17% IFS 4.03% POD 3.76% UGT 3.51%
Other Families 63.21%
More Families (97)
T3O 124 3.38% 7DLGT 113 3.08% UFGT 106 2.89% NMT 98 2.67% DWF4/CYP90B1 87 2.37% F3H 85 2.31% BR6OX2/CYP85A2 79 2.15% F3'H/CYP75B 76 2.07% CAD 63 1.72% PYKS 59 1.61% STR 57 1.55% CODM/T6ODM 56 1.53% TPS 56 1.53% CAS 55 1.5% GES 51 1.39% CYP71 50 1.36% SMT1/SMT2/SMT3 49 1.33% H6H 46 1.25% CSE 43 1.17% PAL 42 1.14% GS 33 0.9% TRI/TRII 31 0.84% CHS 31 0.84% HCT 31 0.84% COMT 31 0.84% SGD 30 0.82% ANR 29 0.79% IFR 29 0.79% LAC 29 0.79% RAS 29 0.79% G8O/G8H 28 0.76% PMT 28 0.76% T16H 25 0.68% CYP90D1 25 0.68% CPD/CYP90A1 24 0.65% IO 22 0.6% 7DLH 19 0.52% 16OMT 19 0.52% CCR 19 0.52% 8HGO 18 0.49% CYP719 18 0.49% ANS/LDOX 18 0.49% F5H/CYP84A 18 0.49% TAT 18 0.49% CPR 18 0.49% SQE 15 0.41% ROT3/CYP90C1 14 0.38% SLS 13 0.35% CYP51G1 13 0.35% HMGR 12 0.33% FPPS 12 0.33% COR 11 0.3% F3'5'H/CYP75A 11 0.3% DFR 11 0.3% SQS/FDFT1 11 0.3% FNS 10 0.27% CCoAOMT 10 0.27% ISY 8 0.22% BR6OX1/CYP85A1 8 0.22% MVD 8 0.22% NCS 7 0.19% CNMT 7 0.19% CHI 7 0.19% SMO1/SMO2 7 0.19% DXR 7 0.19% BBE 6 0.16% XMT_MXMT_DXMT 6 0.16% HPPR 6 0.16% HDS/IspG 6 0.16% GGPPS 6 0.16% CMK/IspE 5 0.14% AACT 5 0.14% DXS 5 0.14% CYP80B1 4 0.11% TYDC_DDC 4 0.11% MPO 4 0.11% DET2 4 0.11% MVK 4 0.11% HMGS 4 0.11% LAMT 3 0.08% TDC 3 0.08% FK 3 0.08% HYD1 3 0.08% HDR/IspH 3 0.08% IDI 3 0.08% ODC 2 0.05% 6OMT_4OMT_SOMT 2 0.05% FLS 2 0.05% DWF1 2 0.05% PMK 2 0.05% CYP80F1 1 0.03% ADC 1 0.03% CPI1 1 0.03% DWF7 1 0.03% DWF5 1 0.03% MDS/IspF 1 0.03% MCT/IspD 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 440 19 BAHD (137) View species results
Phenylpropanoid pathway 305 13 POD (123) View species results
Alkaloid pathway 303 21 NMT (50) View species results
Flavonoid pathway 184 12 UFGT (92) View species results
Rosmarinic acid pathway 147 7 C4H (68) View species results
Steroid pathway 92 13 CAS (31) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1403 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 247 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
rheum_tanguticum_RtaG0003561.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
rheum_tanguticum_RtaG0022654.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
rheum_tanguticum_RtaG0023223.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00001__sp_A0AA51Z3J4_TYDC2_LOPWI
rheum_tanguticum_RtaG0041814.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00001__sp_A0AA51Z3J4_TYDC2_LOPWI