Rheum tanguticum (rheum_tanguticum)
Imported from atlas release summary for Rheum tanguticum.
1471
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1471
Candidate Genes
C3'H/CYP98A
5.94%
C4H
5.77%
BAHD
5.09%
CYP76
4.52%
4CL
4.17%
IFS
4.03%
POD
3.76%
UGT
3.51%
Other Families
63.21%
More Families (97)
T3O
124
3.38%
7DLGT
113
3.08%
UFGT
106
2.89%
NMT
98
2.67%
DWF4/CYP90B1
87
2.37%
F3H
85
2.31%
BR6OX2/CYP85A2
79
2.15%
F3'H/CYP75B
76
2.07%
CAD
63
1.72%
PYKS
59
1.61%
STR
57
1.55%
CODM/T6ODM
56
1.53%
TPS
56
1.53%
CAS
55
1.5%
GES
51
1.39%
CYP71
50
1.36%
SMT1/SMT2/SMT3
49
1.33%
H6H
46
1.25%
CSE
43
1.17%
PAL
42
1.14%
GS
33
0.9%
TRI/TRII
31
0.84%
CHS
31
0.84%
HCT
31
0.84%
COMT
31
0.84%
SGD
30
0.82%
ANR
29
0.79%
IFR
29
0.79%
LAC
29
0.79%
RAS
29
0.79%
G8O/G8H
28
0.76%
PMT
28
0.76%
T16H
25
0.68%
CYP90D1
25
0.68%
CPD/CYP90A1
24
0.65%
IO
22
0.6%
7DLH
19
0.52%
16OMT
19
0.52%
CCR
19
0.52%
8HGO
18
0.49%
CYP719
18
0.49%
ANS/LDOX
18
0.49%
F5H/CYP84A
18
0.49%
TAT
18
0.49%
CPR
18
0.49%
SQE
15
0.41%
ROT3/CYP90C1
14
0.38%
SLS
13
0.35%
CYP51G1
13
0.35%
HMGR
12
0.33%
FPPS
12
0.33%
COR
11
0.3%
F3'5'H/CYP75A
11
0.3%
DFR
11
0.3%
SQS/FDFT1
11
0.3%
FNS
10
0.27%
CCoAOMT
10
0.27%
ISY
8
0.22%
BR6OX1/CYP85A1
8
0.22%
MVD
8
0.22%
NCS
7
0.19%
CNMT
7
0.19%
CHI
7
0.19%
SMO1/SMO2
7
0.19%
DXR
7
0.19%
BBE
6
0.16%
XMT_MXMT_DXMT
6
0.16%
HPPR
6
0.16%
HDS/IspG
6
0.16%
GGPPS
6
0.16%
CMK/IspE
5
0.14%
AACT
5
0.14%
DXS
5
0.14%
CYP80B1
4
0.11%
TYDC_DDC
4
0.11%
MPO
4
0.11%
DET2
4
0.11%
MVK
4
0.11%
HMGS
4
0.11%
LAMT
3
0.08%
TDC
3
0.08%
FK
3
0.08%
HYD1
3
0.08%
HDR/IspH
3
0.08%
IDI
3
0.08%
ODC
2
0.05%
6OMT_4OMT_SOMT
2
0.05%
FLS
2
0.05%
DWF1
2
0.05%
PMK
2
0.05%
CYP80F1
1
0.03%
ADC
1
0.03%
CPI1
1
0.03%
DWF7
1
0.03%
DWF5
1
0.03%
MDS/IspF
1
0.03%
MCT/IspD
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 440 | 19 | BAHD (137) | View species results |
| Phenylpropanoid pathway | 305 | 13 | POD (123) | View species results |
| Alkaloid pathway | 303 | 21 | NMT (50) | View species results |
| Flavonoid pathway | 184 | 12 | UFGT (92) | View species results |
| Rosmarinic acid pathway | 147 | 7 | C4H (68) | View species results |
| Steroid pathway | 92 | 13 | CAS (31) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1403 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 247 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP719
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| rheum_tanguticum_RtaG0011057.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00009__sp_Q50LH3_C7192_ESCCA |
| rheum_tanguticum_RtaG0011059.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00009__sp_Q50LH3_C7192_ESCCA |
| rheum_tanguticum_RtaG0011061.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00009__sp_Q50LH3_C7192_ESCCA |
| rheum_tanguticum_RtaG0012759.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00008__sp_L7T8H2_C719A_SINHE |
| rheum_tanguticum_RtaG0013568.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00009__sp_Q50LH3_C7192_ESCCA |
| rheum_tanguticum_RtaG0014277.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00008__sp_L7T8H2_C719A_SINHE |
| rheum_tanguticum_RtaG0017308.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00002__sp_B1NF18_C719B_PAPSO |
| rheum_tanguticum_RtaG0022472.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00002__sp_B1NF18_C719B_PAPSO |
| rheum_tanguticum_RtaG0023154.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00010__sp_Q50LH4_C7193_ESCCA |
| rheum_tanguticum_RtaG0031540.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00010__sp_Q50LH4_C7193_ESCCA |
| rheum_tanguticum_RtaG0036067.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00010__sp_Q50LH4_C7193_ESCCA |
| rheum_tanguticum_RtaG0036572.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00009__sp_Q50LH3_C7192_ESCCA |
| rheum_tanguticum_RtaG0036573.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00009__sp_Q50LH3_C7192_ESCCA |
| rheum_tanguticum_RtaG0036575.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00009__sp_Q50LH3_C7192_ESCCA |
| rheum_tanguticum_RtaG0036576.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00009__sp_Q50LH3_C7192_ESCCA |
| rheum_tanguticum_RtaG0036580.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00009__sp_Q50LH3_C7192_ESCCA |
| rheum_tanguticum_RtaG0045193.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00005__sp_B5UAQ8_C7195_ESCCA |
| rheum_tanguticum_RtaG0047015.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00008__sp_L7T8H2_C719A_SINHE |