Rheum tanguticum (rheum_tanguticum)
Imported from atlas release summary for Rheum tanguticum.
1807
Candidate Protein Records
1471
Pathway-Level Records
3672
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3672
Family-Level Calls
C3'H/CYP98A
5.94%
C4H
5.77%
BAHD
5.09%
CYP76
4.52%
4CL
4.17%
IFS
4.03%
POD
3.76%
UGT
3.51%
Other Families
63.21%
More Families (97)
T3O
124
3.38%
7DLGT
113
3.08%
UFGT
106
2.89%
NMT
98
2.67%
DWF4/CYP90B1
87
2.37%
F3H
85
2.31%
BR6OX2/CYP85A2
79
2.15%
F3'H/CYP75B
76
2.07%
CAD
63
1.72%
PYKS
59
1.61%
STR
57
1.55%
CODM/T6ODM
56
1.53%
TPS
56
1.53%
CAS
55
1.5%
GES
51
1.39%
CYP71
50
1.36%
SMT1/SMT2/SMT3
49
1.33%
H6H
46
1.25%
CSE
43
1.17%
PAL
42
1.14%
GS
33
0.9%
TRI/TRII
31
0.84%
CHS
31
0.84%
HCT
31
0.84%
COMT
31
0.84%
SGD
30
0.82%
ANR
29
0.79%
IFR
29
0.79%
LAC
29
0.79%
RAS
29
0.79%
G8O/G8H
28
0.76%
PMT
28
0.76%
T16H
25
0.68%
CYP90D1
25
0.68%
CPD/CYP90A1
24
0.65%
IO
22
0.6%
7DLH
19
0.52%
16OMT
19
0.52%
CCR
19
0.52%
8HGO
18
0.49%
CYP719
18
0.49%
ANS/LDOX
18
0.49%
F5H/CYP84A
18
0.49%
TAT
18
0.49%
CPR
18
0.49%
SQE
15
0.41%
ROT3/CYP90C1
14
0.38%
SLS
13
0.35%
CYP51G1
13
0.35%
HMGR
12
0.33%
FPPS
12
0.33%
COR
11
0.3%
F3'5'H/CYP75A
11
0.3%
DFR
11
0.3%
SQS/FDFT1
11
0.3%
FNS
10
0.27%
CCoAOMT
10
0.27%
ISY
8
0.22%
BR6OX1/CYP85A1
8
0.22%
MVD
8
0.22%
NCS
7
0.19%
CNMT
7
0.19%
CHI
7
0.19%
SMO1/SMO2
7
0.19%
DXR
7
0.19%
BBE
6
0.16%
XMT_MXMT_DXMT
6
0.16%
HPPR
6
0.16%
HDS/IspG
6
0.16%
GGPPS
6
0.16%
CMK/IspE
5
0.14%
AACT
5
0.14%
DXS
5
0.14%
CYP80B1
4
0.11%
TYDC_DDC
4
0.11%
MPO
4
0.11%
DET2
4
0.11%
MVK
4
0.11%
HMGS
4
0.11%
LAMT
3
0.08%
TDC
3
0.08%
FK
3
0.08%
HYD1
3
0.08%
HDR/IspH
3
0.08%
IDI
3
0.08%
ODC
2
0.05%
6OMT_4OMT_SOMT
2
0.05%
FLS
2
0.05%
DWF1
2
0.05%
PMK
2
0.05%
CYP80F1
1
0.03%
ADC
1
0.03%
CPI1
1
0.03%
DWF7
1
0.03%
DWF5
1
0.03%
MDS/IspF
1
0.03%
MCT/IspD
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 440 | 19 | BAHD (137) | View species results |
| Phenylpropanoid pathway | 305 | 13 | POD (123) | View species results |
| Alkaloid pathway | 303 | 21 | NMT (50) | View species results |
| Flavonoid pathway | 184 | 12 | UFGT (92) | View species results |
| Rosmarinic acid pathway | 147 | 7 | C4H (68) | View species results |
| Steroid pathway | 92 | 13 | CAS (31) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1403 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 247 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C3'H/CYP98A
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| rheum_tanguticum_RtaG0045315.1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| rheum_tanguticum_RtaG0045617.1 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| rheum_tanguticum_RtaG0045685.1 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| rheum_tanguticum_RtaG0045907.1 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| rheum_tanguticum_RtaG0045908.1 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| rheum_tanguticum_RtaG0045909.1 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| rheum_tanguticum_RtaG0045938.1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| rheum_tanguticum_RtaG0046934.1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| rheum_tanguticum_RtaG0046944.1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| rheum_tanguticum_RtaG0046952.1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| rheum_tanguticum_RtaG0046953.1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| rheum_tanguticum_RtaG0046954.1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| rheum_tanguticum_RtaG0046964.1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| rheum_tanguticum_RtaG0047015.1 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| rheum_tanguticum_RtaG0047273.1 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| rheum_tanguticum_RtaG0047319.1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| rheum_tanguticum_RtaG0047930.1 | Phenylpropanoid | C3'H/CYP98A | medium | pass |
| rheum_tanguticum_RtaG0048000.1 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |