PlantSME Plant secondary metabolism enzyme database

Rhizophora apiculata (rhizophora_apiculata)

Imported from atlas release summary for Rhizophora apiculata.

1607
Candidate Protein Records
1382
Pathway-Level Records
3392
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 32.42% Alkaloid pathway 21.35% Phenylpropanoid pathway 17.51% Flavonoid pathway 14.54% Rosmarinic acid pathway 8.83% Steroid pathway 5.35%
Family Distribution
BAHD 6.25% C4H 6.19% C3'H/CYP98A 5.45% UGT 4.6% 7DLGT 4.39% UFGT 4.19% 4CL 3.89% CYP76 3.63%
Other Families 61.41%
More Families (95)
POD 116 3.42% IFS 106 3.12% T3O 102 3.01% DWF4/CYP90B1 86 2.54% F3H 81 2.39% F3'H/CYP75B 68 2.0% NMT 66 1.95% CAS 59 1.74% STR 56 1.65% CODM/T6ODM 56 1.65% TPS 55 1.62% GES 53 1.56% CAD 52 1.53% CYP71 49 1.44% IFR 46 1.36% HCT 46 1.36% BR6OX2/CYP85A2 46 1.36% PMT 45 1.33% SMT1/SMT2/SMT3 40 1.18% CYP90D1 39 1.15% H6H 36 1.06% IO 36 1.06% TRI/TRII 31 0.91% PYKS 31 0.91% RAS 30 0.88% BBE 29 0.85% GS 28 0.83% LAC 27 0.8% G8O/G8H 26 0.77% SGD 25 0.74% CSE 24 0.71% COMT 24 0.71% FNS 23 0.68% T16H 22 0.65% CCR 21 0.62% F3'5'H/CYP75A 19 0.56% ANR 19 0.56% TAT 18 0.53% SLS 17 0.5% F5H/CYP84A 16 0.47% 16OMT 15 0.44% PAL 15 0.44% CPD/CYP90A1 15 0.44% 8HGO 13 0.38% DFR 13 0.38% 7DLH 12 0.35% COR 12 0.35% ANS/LDOX 12 0.35% MPO 11 0.32% NCS 11 0.32% CYP51G1 11 0.32% FPPS 11 0.32% CYP80B1 10 0.29% CHS 10 0.29% LAMT 8 0.24% CYP719 8 0.24% CCoAOMT 8 0.24% BR6OX1/CYP85A1 8 0.24% HPPR 7 0.21% CPR 7 0.21% CNMT 6 0.18% AACT 6 0.18% DXS 6 0.18% ROT3/CYP90C1 5 0.15% SQS/FDFT1 5 0.15% GGPPS 5 0.15% MVK 5 0.15% DET2 4 0.12% SMO1/SMO2 4 0.12% MVD 4 0.12% ADC 3 0.09% TYDC_DDC 3 0.09% TDC 3 0.09% SQE 3 0.09% HMGR 3 0.09% ISY 2 0.06% CHI 2 0.06% HYD1 2 0.06% DWF5 2 0.06% IDI 2 0.06% MDS/IspF 2 0.06% MCT/IspD 2 0.06% HDR/IspH 2 0.06% HMGS 2 0.06% HDS/IspG 2 0.06% PMK 2 0.06% DXR 2 0.06% CYP80F1 1 0.03% XMT_MXMT_DXMT 1 0.03% FLS 1 0.03% DWF7 1 0.03% DWF1 1 0.03% FK 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 448 19 BAHD (154) View species results
Alkaloid pathway 295 21 7DLGT (59) View species results
Phenylpropanoid pathway 242 11 POD (105) View species results
Flavonoid pathway 201 9 UFGT (125) View species results
Rosmarinic acid pathway 122 7 C4H (48) View species results
Steroid pathway 74 12 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1220 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 288 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Protein/Isoform Record Pathway Family Confidence Status Best Target
rhizophora_apiculata_RA_23053 Alkaloid GES medium pass GES__00006__sp_Q4JHG3_GRNLC_PERFH
rhizophora_apiculata_RA_24904 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
rhizophora_apiculata_RA_24905 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU