PlantSME Plant secondary metabolism enzyme database

Rosa rugosa (rosa_rugosa)

Imported from atlas release summary for Rosa rugosa.

2225
Candidate Protein Records
2079
Pathway-Level Records
4858
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.23% Alkaloid pathway 23.67% Phenylpropanoid pathway 19.14% Flavonoid pathway 14.09% Rosmarinic acid pathway 8.08% Steroid pathway 6.78%
Family Distribution
C4H 6.13% C3'H/CYP98A 6.05% UGT 5.19% 7DLGT 5.1% UFGT 5.1% BAHD 5.0% IFS 3.95% T3O 3.56%
Other Families 59.9%
More Families (95)
F3H 168 3.46% CYP76 164 3.38% POD 143 2.94% 4CL 123 2.53% CAD 106 2.18% DWF4/CYP90B1 102 2.1% BR6OX2/CYP85A2 102 2.1% H6H 97 2.0% CODM/T6ODM 89 1.83% NMT 87 1.79% F3'H/CYP75B 87 1.79% STR 80 1.65% LAC 77 1.59% CAS 66 1.36% SMT1/SMT2/SMT3 60 1.24% CYP90D1 60 1.24% CSE 57 1.17% GES 55 1.13% TRI/TRII 54 1.11% GS 53 1.09% TPS 53 1.09% 7DLH 46 0.95% CYP71 45 0.93% HCT 44 0.91% SLS 40 0.82% TAT 36 0.74% ANR 35 0.72% SGD 34 0.7% PMT 34 0.7% COMT 33 0.68% IO 32 0.66% F3'5'H/CYP75A 31 0.64% IFR 31 0.64% T16H 29 0.6% RAS 28 0.58% CCR 27 0.56% LAMT 26 0.54% 16OMT 24 0.49% COR 23 0.47% SQE 23 0.47% PYKS 22 0.45% NCS 22 0.45% FNS 21 0.43% BR6OX1/CYP85A1 21 0.43% BBE 20 0.41% 8HGO 19 0.39% DFR 16 0.33% F5H/CYP84A 15 0.31% CNMT 14 0.29% G8O/G8H 13 0.27% CCoAOMT 13 0.27% CYP51G1 13 0.27% PAL 12 0.25% HPPR 12 0.25% ROT3/CYP90C1 12 0.25% CPD/CYP90A1 11 0.23% HMGR 11 0.23% ISY 10 0.21% ANS/LDOX 10 0.21% GGPPS 10 0.21% MPO 9 0.19% CYP719 8 0.16% CHS 8 0.16% CPR 8 0.16% AACT 7 0.14% DET2 6 0.12% FPPS 5 0.1% TYDC_DDC 4 0.08% SQS/FDFT1 4 0.08% MVK 4 0.08% ODC 3 0.06% CYP80B1 3 0.06% 6OMT_4OMT_SOMT 3 0.06% FLS 3 0.06% SMO1/SMO2 3 0.06% DXS 3 0.06% MVD 3 0.06% DXR 3 0.06% CMK/IspE 2 0.04% HDR/IspH 2 0.04% IDI 2 0.04% HDS/IspG 2 0.04% MCT/IspD 2 0.04% TDC 1 0.02% ADC 1 0.02% CHI 1 0.02% HYD1 1 0.02% DWF1 1 0.02% DWF7 1 0.02% FK 1 0.02% DWF5 1 0.02% CPI1 1 0.02% MDS/IspF 1 0.02% HMGS 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 587 18 UGT (243) View species results
Alkaloid pathway 492 21 7DLGT (134) View species results
Phenylpropanoid pathway 398 11 POD (135) View species results
Flavonoid pathway 293 9 UFGT (234) View species results
Rosmarinic acid pathway 168 7 C4H (73) View species results
Steroid pathway 141 13 CAS (61) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1791 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 315 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
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Protein/Isoform Record Pathway Family Confidence Status
Rrug06G0066730.1 Alkaloid GS low borderline
Rrug07G0009020.1 Alkaloid GS high pass
Rrug07G0009030.1 Alkaloid GS high pass