Saccharum spontaneum (saccharum_spontaneum)
Imported from atlas release summary for Saccharum spontaneum.
3066
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3066
Candidate Genes
C4H
7.01%
C3'H/CYP98A
6.49%
BAHD
5.27%
UGT
4.48%
POD
4.41%
7DLGT
4.16%
UFGT
3.92%
CYP76
3.88%
Other Families
60.38%
More Families (95)
IFS
285
3.66%
T3O
280
3.6%
4CL
225
2.89%
DWF4/CYP90B1
214
2.75%
F3'H/CYP75B
208
2.67%
BR6OX2/CYP85A2
184
2.36%
CYP71
152
1.95%
F3H
138
1.77%
STR
135
1.73%
NMT
121
1.55%
SMT1/SMT2/SMT3
106
1.36%
PYKS
90
1.16%
SLS
90
1.16%
CAS
90
1.16%
CAD
89
1.14%
G8O/G8H
85
1.09%
TRI/TRII
80
1.03%
H6H
78
1.0%
SGD
77
0.99%
CCR
77
0.99%
HCT
77
0.99%
RAS
73
0.94%
LAC
70
0.9%
CODM/T6ODM
69
0.89%
T16H
66
0.85%
CSE
63
0.81%
IFR
62
0.8%
PMT
61
0.78%
ANR
61
0.78%
TPS
61
0.78%
COMT
60
0.77%
GES
58
0.75%
F5H/CYP84A
56
0.72%
FNS
54
0.69%
PAL
54
0.69%
DFR
52
0.67%
GS
50
0.64%
16OMT
50
0.64%
CYP90D1
50
0.64%
CYP51G1
49
0.63%
CHS
45
0.58%
CPD/CYP90A1
41
0.53%
IO
39
0.5%
NCS
39
0.5%
COR
39
0.5%
F3'5'H/CYP75A
39
0.5%
BR6OX1/CYP85A1
33
0.42%
8HGO
26
0.33%
7DLH
21
0.27%
ANS/LDOX
21
0.27%
BBE
20
0.26%
HPPR
19
0.24%
CCoAOMT
18
0.23%
TAT
18
0.23%
CPR
15
0.19%
FPPS
15
0.19%
CNMT
13
0.17%
AACT
13
0.17%
MVK
12
0.15%
LAMT
11
0.14%
TYDC_DDC
11
0.14%
CYP719
10
0.13%
TDC
10
0.13%
SMO1/SMO2
10
0.13%
HYD1
10
0.13%
MPO
9
0.12%
DWF1
9
0.12%
6OMT_4OMT_SOMT
8
0.1%
SQS/FDFT1
8
0.1%
HMGS
8
0.1%
GGPPS
8
0.1%
CYP80B1
7
0.09%
XMT_MXMT_DXMT
7
0.09%
CHI
7
0.09%
ODC
6
0.08%
FLS
6
0.08%
HDS/IspG
6
0.08%
ISY
5
0.06%
SQE
5
0.06%
ROT3/CYP90C1
5
0.06%
CPI1
5
0.06%
IDI
5
0.06%
DXS
5
0.06%
ADC
4
0.05%
FK
4
0.05%
CYP80F1
3
0.04%
DET2
3
0.04%
MVD
3
0.04%
HDR/IspH
3
0.04%
HMGR
3
0.04%
DXR
3
0.04%
MCT/IspD
3
0.04%
DWF7
2
0.03%
DWF5
1
0.01%
MDS/IspF
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 847 | 15 | UGT (316) | View species results |
| Alkaloid pathway | 662 | 26 | 7DLGT (140) | View species results |
| Phenylpropanoid pathway | 643 | 12 | POD (306) | View species results |
| Flavonoid pathway | 463 | 11 | UFGT (294) | View species results |
| Rosmarinic acid pathway | 284 | 7 | C4H (139) | View species results |
| Steroid pathway | 167 | 13 | CAS (61) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3270 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 560 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Sspon.01G0001280-1A-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| Sspon.01G0001280-2B-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| Sspon.01G0001280-3C-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00093__sp_Q9SV07_ASAT1_ARATH |
| Sspon.01G0001280-4D-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| Sspon.01G0003820-1A-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00022__sp_K7PEY4_RAM2_MEDTR |
| Sspon.01G0003820-2B-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00022__sp_K7PEY4_RAM2_MEDTR |
| Sspon.01G0003820-3D-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00022__sp_K7PEY4_RAM2_MEDTR |
| Sspon.01G0005110-3D-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Sspon.01G0005980-1A-mRNA-1 | Terpenoid | BAHD | medium | pass | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| Sspon.01G0005980-1P-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| Sspon.01G0005980-1T-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| Sspon.01G0005980-2B-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| Sspon.01G0005990-1A-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| Sspon.01G0009120-1A-mRNA-1:cds | Terpenoid | BAHD | low | borderline | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Sspon.01G0010400-2B-mRNA-1 | Terpenoid | BAHD | medium | pass | BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ |
| Sspon.01G0010400-3C-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ |
| Sspon.01G0010400-4D-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ |
| Sspon.01G0011140-1A-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Sspon.01G0011140-2B-mRNA-1:cds | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| Sspon.01G0011550-1A-mRNA-1:cds | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| Sspon.01G0011550-2C-mRNA-1:cds | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| Sspon.01G0011580-1T-mRNA-1 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| Sspon.01G0011590-1A-mRNA-1 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| Sspon.01G0012200-1A-mRNA-1:cds | Terpenoid | BAHD | low | borderline | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| Sspon.01G0012200-2C-mRNA-1:cds | Terpenoid | BAHD | low | borderline | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| Sspon.01G0015340-1A-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00034__sp_P10349_GPAT2_CUCMO |
| Sspon.01G0015340-2C-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00034__sp_P10349_GPAT2_CUCMO |
| Sspon.01G0015590-2C-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Sspon.01G0015590-3D-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00026__sp_O64811_SCP9_ARATH |
| Sspon.01G0015610-1A-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Sspon.01G0015610-2B-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Sspon.01G0015610-3C-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Sspon.01G0015610-4D-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Sspon.01G0015960-1A-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Sspon.01G0015960-1P-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Sspon.01G0015960-2B-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Sspon.01G0015960-3C-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Sspon.01G0015960-4D-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Sspon.01G0015980-1A-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Sspon.01G0016040-1A-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC |
| Sspon.01G0016040-2B-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC |
| Sspon.01G0016040-3C-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC |
| Sspon.01G0016950-1A-mRNA-1:cds | Terpenoid | BAHD | low | borderline | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| Sspon.01G0017100-1A-mRNA-1 | Terpenoid | BAHD | low | borderline | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| Sspon.01G0017100-2D-mRNA-1 | Terpenoid | BAHD | low | borderline | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| Sspon.01G0017790-1A-mRNA-1:cds | Terpenoid | BAHD | low | borderline | BAHD__00001__sp_A0A068BGA5_AT1_ACTDE |
| Sspon.01G0017790-2B-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| Sspon.01G0017790-3C-mRNA-1:cds | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| Sspon.01G0020920-1A-mRNA-1 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Sspon.01G0020920-2B-mRNA-1 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |