PlantSME Plant secondary metabolism enzyme database

Saccharum spontaneum (saccharum_spontaneum)

Imported from atlas release summary for Saccharum spontaneum.

3066
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 847 15 UGT (316) View species results
Alkaloid pathway 662 26 7DLGT (140) View species results
Phenylpropanoid pathway 643 12 POD (306) View species results
Flavonoid pathway 463 11 UFGT (294) View species results
Rosmarinic acid pathway 284 7 C4H (139) View species results
Steroid pathway 167 13 CAS (61) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3270 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 560 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
Sspon.01G0010010-1A-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Sspon.01G0010010-2C-mRNA-1:cds Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
Sspon.01G0010010-3D-mRNA-1 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
Sspon.01G0015240-2C-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.01G0016420-2P-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Sspon.01G0016420-3D-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Sspon.01G0020780-2B-mRNA-1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.01G0020780-4D-mRNA-1:cds Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.01G0027980-1P-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
Sspon.01G0027980-2D-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
Sspon.01G0039100-1B-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Sspon.01G0039540-1B-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Sspon.01G0039540-2C-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Sspon.01G0062710-1D-mRNA-1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.01G0062720-1D-mRNA-1:cds Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.02G0011440-1A-mRNA-1:cds Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.02G0011440-3D-mRNA-1:cds Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.02G0015100-1A-mRNA-1 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Sspon.02G0015100-1T-mRNA-1.cds1 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
Sspon.02G0026290-2B-mRNA-1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Sspon.02G0038100-1B-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Sspon.02G0049870-1C-mRNA-1:cds Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
Sspon.03G0002140-2D-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Sspon.03G0003520-1A-mRNA-1:cds Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.03G0003520-2C-mRNA-1:cds Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.03G0003530-1A-mRNA-1:cds Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.03G0003530-2B-mRNA-1:cds Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.03G0010560-2B-mRNA-1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.04G0000870-1A-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Sspon.04G0000870-2B-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Sspon.04G0011840-1A-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Sspon.04G0011840-3C-mRNA-1:cds Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
Sspon.04G0013460-1A-mRNA-1:cds Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.04G0013460-3D-mRNA-1:cds Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.04G0016410-1A-mRNA-1:cds Phenylpropanoid CAD medium pass CAD__00007__sp_O24562_CADH_MAIZE
Sspon.04G0016410-2B-mRNA-1:cds Phenylpropanoid CAD medium pass CAD__00007__sp_O24562_CADH_MAIZE
Sspon.05G0002520-1P-mRNA-1:cds Phenylpropanoid CAD medium pass CAD__00013__sp_Q0JA75_CADH7_ORYSJ
Sspon.05G0002520-2C-mRNA-1:cds Phenylpropanoid CAD medium pass CAD__00013__sp_Q0JA75_CADH7_ORYSJ
Sspon.05G0003070-1A-mRNA-1:cds Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Sspon.05G0003070-2B-mRNA-1:cds Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Sspon.05G0003070-3C-mRNA-1:cds Phenylpropanoid CAD medium pass CAD__00016__sp_Q9SJ10_CADH3_ARATH
Sspon.05G0003070-4D-mRNA-1:cds Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Sspon.05G0003420-1A-mRNA-1:cds Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.05G0003420-2C-mRNA-1:cds Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.05G0003420-3D-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.05G0003470-1A-mRNA-1:cds Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.05G0003480-2D-mRNA-1:cds Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Sspon.05G0013990-2D-mRNA-1 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
Sspon.05G0014000-3D-mRNA-1 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
Sspon.05G0014550-1A-mRNA-1:cds Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH