Saccharum spontaneum (saccharum_spontaneum)
Imported from atlas release summary for Saccharum spontaneum.
3532
Candidate Protein Records
3066
Pathway-Level Records
7784
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
7784
Family-Level Calls
C4H
7.01%
C3'H/CYP98A
6.49%
BAHD
5.27%
UGT
4.48%
POD
4.41%
7DLGT
4.16%
UFGT
3.92%
CYP76
3.88%
Other Families
60.38%
More Families (95)
IFS
285
3.66%
T3O
280
3.6%
4CL
225
2.89%
DWF4/CYP90B1
214
2.75%
F3'H/CYP75B
208
2.67%
BR6OX2/CYP85A2
184
2.36%
CYP71
152
1.95%
F3H
138
1.77%
STR
135
1.73%
NMT
121
1.55%
SMT1/SMT2/SMT3
106
1.36%
PYKS
90
1.16%
SLS
90
1.16%
CAS
90
1.16%
CAD
89
1.14%
G8O/G8H
85
1.09%
TRI/TRII
80
1.03%
H6H
78
1.0%
SGD
77
0.99%
CCR
77
0.99%
HCT
77
0.99%
RAS
73
0.94%
LAC
70
0.9%
CODM/T6ODM
69
0.89%
T16H
66
0.85%
CSE
63
0.81%
IFR
62
0.8%
PMT
61
0.78%
ANR
61
0.78%
TPS
61
0.78%
COMT
60
0.77%
GES
58
0.75%
F5H/CYP84A
56
0.72%
FNS
54
0.69%
PAL
54
0.69%
DFR
52
0.67%
GS
50
0.64%
16OMT
50
0.64%
CYP90D1
50
0.64%
CYP51G1
49
0.63%
CHS
45
0.58%
CPD/CYP90A1
41
0.53%
IO
39
0.5%
NCS
39
0.5%
COR
39
0.5%
F3'5'H/CYP75A
39
0.5%
BR6OX1/CYP85A1
33
0.42%
8HGO
26
0.33%
7DLH
21
0.27%
ANS/LDOX
21
0.27%
BBE
20
0.26%
HPPR
19
0.24%
CCoAOMT
18
0.23%
TAT
18
0.23%
CPR
15
0.19%
FPPS
15
0.19%
CNMT
13
0.17%
AACT
13
0.17%
MVK
12
0.15%
LAMT
11
0.14%
TYDC_DDC
11
0.14%
CYP719
10
0.13%
TDC
10
0.13%
SMO1/SMO2
10
0.13%
HYD1
10
0.13%
MPO
9
0.12%
DWF1
9
0.12%
6OMT_4OMT_SOMT
8
0.1%
SQS/FDFT1
8
0.1%
HMGS
8
0.1%
GGPPS
8
0.1%
CYP80B1
7
0.09%
XMT_MXMT_DXMT
7
0.09%
CHI
7
0.09%
ODC
6
0.08%
FLS
6
0.08%
HDS/IspG
6
0.08%
ISY
5
0.06%
SQE
5
0.06%
ROT3/CYP90C1
5
0.06%
CPI1
5
0.06%
IDI
5
0.06%
DXS
5
0.06%
ADC
4
0.05%
FK
4
0.05%
CYP80F1
3
0.04%
DET2
3
0.04%
MVD
3
0.04%
HDR/IspH
3
0.04%
HMGR
3
0.04%
DXR
3
0.04%
MCT/IspD
3
0.04%
DWF7
2
0.03%
DWF5
1
0.01%
MDS/IspF
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 847 | 15 | UGT (316) | View species results |
| Alkaloid pathway | 662 | 26 | 7DLGT (140) | View species results |
| Phenylpropanoid pathway | 643 | 12 | POD (306) | View species results |
| Flavonoid pathway | 463 | 11 | UFGT (294) | View species results |
| Rosmarinic acid pathway | 284 | 7 | C4H (139) | View species results |
| Steroid pathway | 167 | 13 | CAS (61) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3270 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 560 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Sspon.02G0007400-1A-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| Sspon.02G0007400-2B-mRNA-1 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| Sspon.02G0007410-1A-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| Sspon.02G0007420-1A-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00117__sp_U5NH37_7DLGT_CATRO |
| Sspon.02G0007430-1A-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| Sspon.02G0007430-3C-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| Sspon.02G0007430-4D-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| Sspon.02G0010070-1A-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00074__sp_Q7XT97_UGT79_ORYSJ |
| Sspon.02G0010110-1A-mRNA-1 | Terpenoid | UGT | medium | pass | UGT__00074__sp_Q7XT97_UGT79_ORYSJ |
| Sspon.02G0010110-2D-mRNA-1:cds | Terpenoid | UGT | low | borderline | UGT__00074__sp_Q7XT97_UGT79_ORYSJ |
| Sspon.02G0010130-1A-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00074__sp_Q7XT97_UGT79_ORYSJ |
| Sspon.02G0010130-1P-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00074__sp_Q7XT97_UGT79_ORYSJ |
| Sspon.02G0010140-1A-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00074__sp_Q7XT97_UGT79_ORYSJ |
| Sspon.02G0015470-1A-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| Sspon.02G0015470-1P-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| Sspon.02G0015470-2B-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| Sspon.02G0015480-1A-mRNA-1 | Terpenoid | UGT | low | borderline | UGT__00082__sp_Q9C9B0_U89B1_ARATH |
| Sspon.02G0015480-1P-mRNA-1 | Terpenoid | UGT | medium | pass | UGT__00019__sp_A0A2R4LMF9_73C25_BARVU |
| Sspon.02G0015480-2B-mRNA-1.cds1 | Terpenoid | UGT | medium | pass | UGT__00019__sp_A0A2R4LMF9_73C25_BARVU |
| Sspon.02G0015480-3C-mRNA-1 | Terpenoid | UGT | medium | pass | UGT__00019__sp_A0A2R4LMF9_73C25_BARVU |
| Sspon.02G0015480-4D-mRNA-1.cds1 | Terpenoid | UGT | medium | pass | UGT__00019__sp_A0A2R4LMF9_73C25_BARVU |
| Sspon.02G0016450-1A-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00046__sp_K4GMD6_73C9_BARVU |
| Sspon.02G0016460-1A-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00092__sp_Q9LNI1_U72B3_ARATH |
| Sspon.02G0016460-1T-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00092__sp_Q9LNI1_U72B3_ARATH |
| Sspon.02G0016460-2C-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00092__sp_Q9LNI1_U72B3_ARATH |
| Sspon.02G0021710-1A-mRNA-1 | Terpenoid | UGT | medium | pass | UGT__00085__sp_Q9FIA0_U76C2_ARATH |
| Sspon.02G0021710-2B-mRNA-1.cds1 | Terpenoid | UGT | medium | pass | UGT__00085__sp_Q9FIA0_U76C2_ARATH |
| Sspon.02G0021730-1A-mRNA-1:cds | Terpenoid | UGT | medium | pass | UGT__00116__sp_U3UA11_UGT7_CATRO |
| Sspon.02G0021780-1P-mRNA-1.cds1 | Terpenoid | UGT | medium | pass | UGT__00073__sp_Q6VAB4_U76G1_STERE |
| Sspon.02G0021780-2B-mRNA-1.cds1 | Terpenoid | UGT | medium | pass | UGT__00085__sp_Q9FIA0_U76C2_ARATH |
| Sspon.02G0021780-2P-mRNA-1.cds1 | Terpenoid | UGT | medium | pass | UGT__00073__sp_Q6VAB4_U76G1_STERE |
| Sspon.02G0021780-2T-mRNA-1.cds1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| Sspon.02G0021780-3C-mRNA-1.cds1 | Terpenoid | UGT | medium | pass | UGT__00073__sp_Q6VAB4_U76G1_STERE |
| Sspon.02G0021780-4P-mRNA-1.cds1 | Terpenoid | UGT | medium | pass | UGT__00085__sp_Q9FIA0_U76C2_ARATH |
| Sspon.02G0021780-5P-mRNA-1 | Terpenoid | UGT | medium | pass | UGT__00116__sp_U3UA11_UGT7_CATRO |
| Sspon.02G0021790-1A-mRNA-1.cds1 | Terpenoid | UGT | medium | pass | UGT__00084__sp_Q9FI99_U76C1_ARATH |
| Sspon.02G0021790-2D-mRNA-1 | Terpenoid | UGT | medium | pass | UGT__00085__sp_Q9FIA0_U76C2_ARATH |
| Sspon.02G0021800-1A-mRNA-1.cds1 | Terpenoid | UGT | medium | pass | UGT__00098__sp_Q9LTH2_U76E2_ARATH |
| Sspon.02G0021800-2C-mRNA-1.cds1 | Terpenoid | UGT | medium | pass | UGT__00039__sp_K4D3V7_U76E1_SOLLC |
| Sspon.02G0021810-1A-mRNA-1.cds1 | Terpenoid | UGT | medium | pass | UGT__00080__sp_Q94AB5_U7E12_ARATH |
| Sspon.02G0021810-2B-mRNA-1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| Sspon.02G0021820-1A-mRNA-1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| Sspon.02G0021820-2C-mRNA-1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| Sspon.02G0021820-3D-mRNA-1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| Sspon.02G0022650-1A-mRNA-1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| Sspon.02G0022650-2D-mRNA-1.cds1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| Sspon.02G0022660-1A-mRNA-1.cds1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| Sspon.02G0022660-2D-mRNA-1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| Sspon.02G0022670-1P-mRNA-1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| Sspon.02G0022670-4D-mRNA-1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |