PlantSME Plant secondary metabolism enzyme database

Saccharum spontaneum (saccharum_spontaneum)

Imported from atlas release summary for Saccharum spontaneum.

3532
Candidate Protein Records
3066
Pathway-Level Records
7784
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 27.63% Alkaloid pathway 21.59% Phenylpropanoid pathway 20.97% Flavonoid pathway 15.1% Rosmarinic acid pathway 9.26% Steroid pathway 5.45%
Family Distribution
C4H 7.01% C3'H/CYP98A 6.49% BAHD 5.27% UGT 4.48% POD 4.41% 7DLGT 4.16% UFGT 3.92% CYP76 3.88%
Other Families 60.38%
More Families (95)
IFS 285 3.66% T3O 280 3.6% 4CL 225 2.89% DWF4/CYP90B1 214 2.75% F3'H/CYP75B 208 2.67% BR6OX2/CYP85A2 184 2.36% CYP71 152 1.95% F3H 138 1.77% STR 135 1.73% NMT 121 1.55% SMT1/SMT2/SMT3 106 1.36% PYKS 90 1.16% SLS 90 1.16% CAS 90 1.16% CAD 89 1.14% G8O/G8H 85 1.09% TRI/TRII 80 1.03% H6H 78 1.0% SGD 77 0.99% CCR 77 0.99% HCT 77 0.99% RAS 73 0.94% LAC 70 0.9% CODM/T6ODM 69 0.89% T16H 66 0.85% CSE 63 0.81% IFR 62 0.8% PMT 61 0.78% ANR 61 0.78% TPS 61 0.78% COMT 60 0.77% GES 58 0.75% F5H/CYP84A 56 0.72% FNS 54 0.69% PAL 54 0.69% DFR 52 0.67% GS 50 0.64% 16OMT 50 0.64% CYP90D1 50 0.64% CYP51G1 49 0.63% CHS 45 0.58% CPD/CYP90A1 41 0.53% IO 39 0.5% NCS 39 0.5% COR 39 0.5% F3'5'H/CYP75A 39 0.5% BR6OX1/CYP85A1 33 0.42% 8HGO 26 0.33% 7DLH 21 0.27% ANS/LDOX 21 0.27% BBE 20 0.26% HPPR 19 0.24% CCoAOMT 18 0.23% TAT 18 0.23% CPR 15 0.19% FPPS 15 0.19% CNMT 13 0.17% AACT 13 0.17% MVK 12 0.15% LAMT 11 0.14% TYDC_DDC 11 0.14% CYP719 10 0.13% TDC 10 0.13% SMO1/SMO2 10 0.13% HYD1 10 0.13% MPO 9 0.12% DWF1 9 0.12% 6OMT_4OMT_SOMT 8 0.1% SQS/FDFT1 8 0.1% HMGS 8 0.1% GGPPS 8 0.1% CYP80B1 7 0.09% XMT_MXMT_DXMT 7 0.09% CHI 7 0.09% ODC 6 0.08% FLS 6 0.08% HDS/IspG 6 0.08% ISY 5 0.06% SQE 5 0.06% ROT3/CYP90C1 5 0.06% CPI1 5 0.06% IDI 5 0.06% DXS 5 0.06% ADC 4 0.05% FK 4 0.05% CYP80F1 3 0.04% DET2 3 0.04% MVD 3 0.04% HDR/IspH 3 0.04% HMGR 3 0.04% DXR 3 0.04% MCT/IspD 3 0.04% DWF7 2 0.03% DWF5 1 0.01% MDS/IspF 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 847 15 UGT (316) View species results
Alkaloid pathway 662 26 7DLGT (140) View species results
Phenylpropanoid pathway 643 12 POD (306) View species results
Flavonoid pathway 463 11 UFGT (294) View species results
Rosmarinic acid pathway 284 7 C4H (139) View species results
Steroid pathway 167 13 CAS (61) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 3270 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 560 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Sspon.08G0017870-1B-mRNA-1:cds Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH
Sspon.08G0017870-2C-mRNA-1:cds Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH
Sspon.08G0017870-3D-mRNA-1:cds Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH
Sspon.08G0020590-1B-mRNA-1:cds Terpenoid UGT low borderline UGT__00063__sp_P0DO67_GT943_SIRGR
Sspon.08G0021450-1B-mRNA-1:cds Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
Sspon.08G0022220-2D-mRNA-1 Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
Sspon.08G0022710-1B-mRNA-1:cds Terpenoid UGT medium pass UGT__00112__sp_Q9ZQG4_U73B5_ARATH
Sspon.08G0022720-1B-mRNA-1:cds Terpenoid UGT medium pass UGT__00112__sp_Q9ZQG4_U73B5_ARATH
Sspon.08G0022720-2D-mRNA-1:cds Terpenoid UGT medium pass UGT__00112__sp_Q9ZQG4_U73B5_ARATH
Sspon.08G0028790-1D-mRNA-1 Terpenoid UGT medium pass UGT__00031__sp_F8WKW0_UGT1_GARJA
Sspon.08G0030600-1D-mRNA-1:cds Terpenoid UGT medium pass UGT__00025__sp_C3W7B0_CGT_ORYSI
Sspon.08G0030610-1D-mRNA-1.cds1 Terpenoid UGT medium pass UGT__00025__sp_C3W7B0_CGT_ORYSI