Saccharum spp.R570 (saccharum_spp_r570)
Imported from atlas release summary for Saccharum spp.R570.
1344
Family-Level Assignments
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1344
Family-Level Assignments
C4H
7.21%
C3'H/CYP98A
6.76%
BAHD
4.44%
UGT
4.32%
CYP76
4.29%
POD
4.26%
IFS
4.17%
7DLGT
3.84%
Other Families
60.72%
More Families (94)
T3O
126
3.75%
UFGT
126
3.75%
4CL
96
2.86%
BR6OX2/CYP85A2
94
2.8%
DWF4/CYP90B1
87
2.59%
F3'H/CYP75B
80
2.38%
STR
73
2.17%
F3H
68
2.03%
CYP71
65
1.94%
H6H
49
1.46%
TRI/TRII
44
1.31%
G8O/G8H
43
1.28%
NMT
43
1.28%
LAC
41
1.22%
SMT1/SMT2/SMT3
40
1.19%
T16H
37
1.1%
CAD
36
1.07%
PYKS
32
0.95%
FNS
32
0.95%
CCR
32
0.95%
TPS
32
0.95%
CAS
31
0.92%
PAL
30
0.89%
SLS
29
0.86%
CODM/T6ODM
29
0.86%
SGD
27
0.8%
GES
27
0.8%
COMT
27
0.8%
CYP90D1
25
0.74%
16OMT
24
0.71%
RAS
24
0.71%
CYP51G1
24
0.71%
F5H/CYP84A
23
0.68%
IO
22
0.66%
DFR
22
0.66%
F3'5'H/CYP75A
22
0.66%
CSE
22
0.66%
HCT
22
0.66%
IFR
18
0.54%
PMT
17
0.51%
7DLH
17
0.51%
ANR
17
0.51%
CHS
16
0.48%
BR6OX1/CYP85A1
16
0.48%
NCS
15
0.45%
COR
13
0.39%
GS
13
0.39%
8HGO
10
0.3%
MPO
10
0.3%
ANS/LDOX
10
0.3%
CNMT
9
0.27%
CPD/CYP90A1
9
0.27%
CYP719
8
0.24%
FPPS
8
0.24%
HPPR
7
0.21%
TAT
7
0.21%
ROT3/CYP90C1
7
0.21%
CYP80B1
6
0.18%
TYDC_DDC
6
0.18%
XMT_MXMT_DXMT
6
0.18%
GGPPS
6
0.18%
ISY
5
0.15%
CPI1
5
0.15%
AACT
5
0.15%
ODC
4
0.12%
TDC
4
0.12%
HMGS
4
0.12%
BBE
3
0.09%
LAMT
3
0.09%
CPR
3
0.09%
SQS/FDFT1
3
0.09%
SMO1/SMO2
3
0.09%
DET2
3
0.09%
DWF7
3
0.09%
MVK
3
0.09%
IDI
3
0.09%
6OMT_4OMT_SOMT
2
0.06%
CHI
2
0.06%
FLS
2
0.06%
HYD1
2
0.06%
DWF5
2
0.06%
FK
2
0.06%
HDR/IspH
2
0.06%
MVD
2
0.06%
MCT/IspD
2
0.06%
HMGR
2
0.06%
CYP80F1
1
0.03%
ADC
1
0.03%
SQE
1
0.03%
DWF1
1
0.03%
PMK
1
0.03%
DXR
1
0.03%
HDS/IspG
1
0.03%
MDS/IspF
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Family-Level Assignments | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 377 | 16 | UGT (135) | View species results |
| Alkaloid pathway | 294 | 23 | 7DLGT (67) | View species results |
| Phenylpropanoid pathway | 266 | 11 | POD (131) | View species results |
| Flavonoid pathway | 197 | 12 | UFGT (123) | View species results |
| Rosmarinic acid pathway | 140 | 7 | C4H (84) | View species results |
| Steroid pathway | 70 | 13 | SMT1/SMT2/SMT3 (25) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Family-level assignments | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1494 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 195 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Sspp07G0013850.1 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| Sspp07G0015180.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Sspp08G0000650.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Sspp08G0002880.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Sspp08G0002970.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Sspp08G0004350.1 | Phenylpropanoid | POD | medium | pass | POD__00015__sp_Q69SV0_APX8_ORYSJ |
| Sspp08G0004690.1 | Phenylpropanoid | POD | low | borderline | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| Sspp08G0004700.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Sspp08G0005830.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Sspp08G0005840.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Sspp08G0005880.1 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Sspp08G0007380.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Sspp08G0012430.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Sspp09G0000300.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Sspp09G0003020.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Sspp09G0003040.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Sspp09G0004840.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Sspp09G0004850.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Sspp09G0004860.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Sspp09G0006820.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Sspp09G0011330.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Sspp09G0011340.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Sspp09G0011380.1 | Phenylpropanoid | POD | low | borderline | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Sspp09G0011390.1 | Phenylpropanoid | POD | low | borderline | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Sspp09G0011400.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Sspp09G0011410.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Sspp09G0011440.1 | Phenylpropanoid | POD | low | borderline | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Sspp09G0011460.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Sspp09G0011470.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Sspp09G0020720.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Sspp10G0006060.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Sspp10G0006760.1 | Phenylpropanoid | POD | medium | pass | POD__00016__sp_Q6QPJ6_PRXQ_POPJC |
| Sspp10G0012490.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Sspp10G0012750.1 | Phenylpropanoid | POD | medium | pass | POD__00018__sp_Q8H0V5_OCP3_ARATH |
| Sspp10G0014410.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Sspp10G0016150.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Sspp10G0016160.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Sspp10G0019070.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| SsppSh_011C110000380.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| SsppSh_011C110000390.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| SsppSh_025L090000700.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| SsppSh_232D060006730.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| SsppSh_254P160009720.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |