Saccharum spp.R570 (saccharum_spp_r570)
Imported from atlas release summary for Saccharum spp.R570.
1344
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1344
Candidate Genes
C4H
7.21%
C3'H/CYP98A
6.76%
BAHD
4.44%
UGT
4.32%
CYP76
4.29%
POD
4.26%
IFS
4.17%
7DLGT
3.84%
Other Families
60.72%
More Families (94)
T3O
126
3.75%
UFGT
126
3.75%
4CL
96
2.86%
BR6OX2/CYP85A2
94
2.8%
DWF4/CYP90B1
87
2.59%
F3'H/CYP75B
80
2.38%
STR
73
2.17%
F3H
68
2.03%
CYP71
65
1.94%
H6H
49
1.46%
TRI/TRII
44
1.31%
G8O/G8H
43
1.28%
NMT
43
1.28%
LAC
41
1.22%
SMT1/SMT2/SMT3
40
1.19%
T16H
37
1.1%
CAD
36
1.07%
PYKS
32
0.95%
FNS
32
0.95%
CCR
32
0.95%
TPS
32
0.95%
CAS
31
0.92%
PAL
30
0.89%
SLS
29
0.86%
CODM/T6ODM
29
0.86%
SGD
27
0.8%
GES
27
0.8%
COMT
27
0.8%
CYP90D1
25
0.74%
16OMT
24
0.71%
RAS
24
0.71%
CYP51G1
24
0.71%
F5H/CYP84A
23
0.68%
IO
22
0.66%
DFR
22
0.66%
F3'5'H/CYP75A
22
0.66%
CSE
22
0.66%
HCT
22
0.66%
IFR
18
0.54%
PMT
17
0.51%
7DLH
17
0.51%
ANR
17
0.51%
CHS
16
0.48%
BR6OX1/CYP85A1
16
0.48%
NCS
15
0.45%
COR
13
0.39%
GS
13
0.39%
8HGO
10
0.3%
MPO
10
0.3%
ANS/LDOX
10
0.3%
CNMT
9
0.27%
CPD/CYP90A1
9
0.27%
CYP719
8
0.24%
FPPS
8
0.24%
HPPR
7
0.21%
TAT
7
0.21%
ROT3/CYP90C1
7
0.21%
CYP80B1
6
0.18%
TYDC_DDC
6
0.18%
XMT_MXMT_DXMT
6
0.18%
GGPPS
6
0.18%
ISY
5
0.15%
CPI1
5
0.15%
AACT
5
0.15%
ODC
4
0.12%
TDC
4
0.12%
HMGS
4
0.12%
BBE
3
0.09%
LAMT
3
0.09%
CPR
3
0.09%
SQS/FDFT1
3
0.09%
SMO1/SMO2
3
0.09%
DET2
3
0.09%
DWF7
3
0.09%
MVK
3
0.09%
IDI
3
0.09%
6OMT_4OMT_SOMT
2
0.06%
CHI
2
0.06%
FLS
2
0.06%
HYD1
2
0.06%
DWF5
2
0.06%
FK
2
0.06%
HDR/IspH
2
0.06%
MVD
2
0.06%
MCT/IspD
2
0.06%
HMGR
2
0.06%
CYP80F1
1
0.03%
ADC
1
0.03%
SQE
1
0.03%
DWF1
1
0.03%
PMK
1
0.03%
DXR
1
0.03%
HDS/IspG
1
0.03%
MDS/IspF
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 377 | 16 | UGT (135) | View species results |
| Alkaloid pathway | 294 | 23 | 7DLGT (67) | View species results |
| Phenylpropanoid pathway | 266 | 11 | POD (131) | View species results |
| Flavonoid pathway | 197 | 12 | UFGT (123) | View species results |
| Rosmarinic acid pathway | 140 | 7 | C4H (84) | View species results |
| Steroid pathway | 70 | 13 | SMT1/SMT2/SMT3 (25) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1494 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 195 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Sspp01G0019720.1 | Terpenoid | TPS | medium | pass | TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF |
| Sspp01G0025900.1 | Terpenoid | TPS | medium | pass | TPS__00060__sp_B9S9Z3_TPS1_RICCO |
| Sspp01G0028230.1 | Terpenoid | TPS | low | borderline | TPS__00032__sp_A0A291LSD6_TPS21_MAIZE |
| Sspp01G0028240.1 | Terpenoid | TPS | medium | pass | TPS__00032__sp_A0A291LSD6_TPS21_MAIZE |
| Sspp01G0029140.1 | Terpenoid | TPS | medium | pass | TPS__00159__sp_Q5GJ59_TPS7_MAIZE |
| Sspp01G0033270.1 | Terpenoid | TPS | medium | pass | TPS__00111__sp_G0Y7D2_TPS2_LITCU |
| Sspp02G0000120.1 | Terpenoid | TPS | medium | pass | TPS__00050__sp_A0A7G5KLV0_TPS1_CANOD |
| Sspp04G0010420.1 | Terpenoid | TPS | medium | pass | TPS__00011__sp_A0A1D6LTV0_TPS26_MAIZE |
| Sspp06G0001590.1 | Terpenoid | TPS | medium | pass | TPS__00062__sp_B9T536_TPS10_RICCO |
| Sspp06G0001600.1 | Terpenoid | TPS | medium | pass | TPS__00110__sp_G0Y7D1_TPS1_LITCU |
| Sspp06G0015050.1 | Terpenoid | TPS | medium | pass | TPS__00167__sp_Q84ZW8_ACSS_MAIZE |
| Sspp06G0015060.1 | Terpenoid | TPS | medium | pass | TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC |
| Sspp07G0003020.1 | Terpenoid | TPS | medium | pass | TPS__00058__sp_B2C4D0_TS23B_MAIZE |
| Sspp07G0004870.1 | Terpenoid | TPS | medium | pass | TPS__00074__sp_C7E5V9_FARS_ZEADI |
| Sspp07G0004880.1 | Terpenoid | TPS | medium | pass | TPS__00074__sp_C7E5V9_FARS_ZEADI |
| Sspp07G0004900.1 | Terpenoid | TPS | medium | pass | TPS__00164__sp_Q6JD69_TPS5B_MAIZE |
| Sspp07G0004910.1 | Terpenoid | TPS | medium | pass | TPS__00073__sp_C7E5V8_FARS_ZEAMH |
| Sspp07G0004930.1 | Terpenoid | TPS | medium | pass | TPS__00165__sp_Q6JD70_TPS5A_MAIZE |
| Sspp07G0004940.1 | Terpenoid | TPS | medium | pass | TPS__00164__sp_Q6JD69_TPS5B_MAIZE |
| Sspp07G0004960.1 | Terpenoid | TPS | medium | pass | TPS__00165__sp_Q6JD70_TPS5A_MAIZE |
| Sspp07G0005330.1 | Terpenoid | TPS | medium | pass | TPS__00151__sp_Q1EG72_TPS11_MAIZE |
| Sspp07G0005540.1 | Terpenoid | TPS | medium | pass | TPS__00058__sp_B2C4D0_TS23B_MAIZE |
| Sspp07G0005550.1 | Terpenoid | TPS | low | borderline | TPS__00058__sp_B2C4D0_TS23B_MAIZE |
| Sspp08G0001420.1 | Terpenoid | TPS | medium | pass | TPS__00008__sp_A0A167V661_TPS8_CAMSI |
| Sspp08G0001430.1 | Terpenoid | TPS | medium | pass | TPS__00018__sp_A0A1V0QSF3_TS8FN_CANSA |
| Sspp09G0001080.1 | Terpenoid | TPS | medium | pass | TPS__00011__sp_A0A1D6LTV0_TPS26_MAIZE |
| Sspp09G0001090.1 | Terpenoid | TPS | medium | pass | TPS__00011__sp_A0A1D6LTV0_TPS26_MAIZE |
| Sspp09G0001100.1 | Terpenoid | TPS | medium | pass | TPS__00011__sp_A0A1D6LTV0_TPS26_MAIZE |
| Sspp09G0001160.1 | Terpenoid | TPS | low | borderline | TPS__00011__sp_A0A1D6LTV0_TPS26_MAIZE |
| Sspp09G0001180.1 | Terpenoid | TPS | medium | pass | TPS__00011__sp_A0A1D6LTV0_TPS26_MAIZE |
| Sspp09G0001190.1 | Terpenoid | TPS | medium | pass | TPS__00011__sp_A0A1D6LTV0_TPS26_MAIZE |
| Sspp10G0006440.1 | Terpenoid | TPS | medium | pass | TPS__00011__sp_A0A1D6LTV0_TPS26_MAIZE |