Saccharum spp.R570 (saccharum_spp_r570)
Imported from atlas release summary for Saccharum spp.R570.
1344
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1344
Candidate Genes
C4H
7.21%
C3'H/CYP98A
6.76%
BAHD
4.44%
UGT
4.32%
CYP76
4.29%
POD
4.26%
IFS
4.17%
7DLGT
3.84%
Other Families
60.72%
More Families (94)
T3O
126
3.75%
UFGT
126
3.75%
4CL
96
2.86%
BR6OX2/CYP85A2
94
2.8%
DWF4/CYP90B1
87
2.59%
F3'H/CYP75B
80
2.38%
STR
73
2.17%
F3H
68
2.03%
CYP71
65
1.94%
H6H
49
1.46%
TRI/TRII
44
1.31%
G8O/G8H
43
1.28%
NMT
43
1.28%
LAC
41
1.22%
SMT1/SMT2/SMT3
40
1.19%
T16H
37
1.1%
CAD
36
1.07%
PYKS
32
0.95%
FNS
32
0.95%
CCR
32
0.95%
TPS
32
0.95%
CAS
31
0.92%
PAL
30
0.89%
SLS
29
0.86%
CODM/T6ODM
29
0.86%
SGD
27
0.8%
GES
27
0.8%
COMT
27
0.8%
CYP90D1
25
0.74%
16OMT
24
0.71%
RAS
24
0.71%
CYP51G1
24
0.71%
F5H/CYP84A
23
0.68%
IO
22
0.66%
DFR
22
0.66%
F3'5'H/CYP75A
22
0.66%
CSE
22
0.66%
HCT
22
0.66%
IFR
18
0.54%
PMT
17
0.51%
7DLH
17
0.51%
ANR
17
0.51%
CHS
16
0.48%
BR6OX1/CYP85A1
16
0.48%
NCS
15
0.45%
COR
13
0.39%
GS
13
0.39%
8HGO
10
0.3%
MPO
10
0.3%
ANS/LDOX
10
0.3%
CNMT
9
0.27%
CPD/CYP90A1
9
0.27%
CYP719
8
0.24%
FPPS
8
0.24%
HPPR
7
0.21%
TAT
7
0.21%
ROT3/CYP90C1
7
0.21%
CYP80B1
6
0.18%
TYDC_DDC
6
0.18%
XMT_MXMT_DXMT
6
0.18%
GGPPS
6
0.18%
ISY
5
0.15%
CPI1
5
0.15%
AACT
5
0.15%
ODC
4
0.12%
TDC
4
0.12%
HMGS
4
0.12%
BBE
3
0.09%
LAMT
3
0.09%
CPR
3
0.09%
SQS/FDFT1
3
0.09%
SMO1/SMO2
3
0.09%
DET2
3
0.09%
DWF7
3
0.09%
MVK
3
0.09%
IDI
3
0.09%
6OMT_4OMT_SOMT
2
0.06%
CHI
2
0.06%
FLS
2
0.06%
HYD1
2
0.06%
DWF5
2
0.06%
FK
2
0.06%
HDR/IspH
2
0.06%
MVD
2
0.06%
MCT/IspD
2
0.06%
HMGR
2
0.06%
CYP80F1
1
0.03%
ADC
1
0.03%
SQE
1
0.03%
DWF1
1
0.03%
PMK
1
0.03%
DXR
1
0.03%
HDS/IspG
1
0.03%
MDS/IspF
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 377 | 16 | UGT (135) | View species results |
| Alkaloid pathway | 294 | 23 | 7DLGT (67) | View species results |
| Phenylpropanoid pathway | 266 | 11 | POD (131) | View species results |
| Flavonoid pathway | 197 | 12 | UFGT (123) | View species results |
| Rosmarinic acid pathway | 140 | 7 | C4H (84) | View species results |
| Steroid pathway | 70 | 13 | SMT1/SMT2/SMT3 (25) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1494 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 195 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Sspp07G0014390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sspp09G0001950.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sspp09G0001970.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sspp09G0006650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sspp09G0009430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sspp10G0004660.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sspp10G0010680.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sspp10G0011580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sspp10G0011680.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sspp10G0011700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sspp10G0012830.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sspp10G0013030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sspp10G0013040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sspp10G0013050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sspp10G0013060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sspp10G0014450.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sspp10G0015170.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SsppSh_201C120001740.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SsppSh_223I210005210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SsppSh_228A020005790.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SsppSh_228A020005840.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SsppSh_246M160008250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SsppSh_254A060009580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |