PlantSME Plant secondary metabolism enzyme database

Salvia miltiorrhiza (salvia_miltiorrhiza)

Imported from atlas release summary for Salvia miltiorrhiza.

1674
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.38% Alkaloid pathway 19.71% Phenylpropanoid pathway 17.86% Flavonoid pathway 14.64% Rosmarinic acid pathway 10.57% Steroid pathway 4.84%
Family Distribution
C3'H/CYP98A 7.51% C4H 6.96% BAHD 5.45% T3O 4.69% UGT 4.35% UFGT 4.33% 7DLGT 4.28% IFS 4.17%
Other Families 58.26%
More Families (96)
CYP76 175 3.94% 4CL 130 2.93% F3'H/CYP75B 126 2.84% DWF4/CYP90B1 126 2.84% POD 125 2.82% F3H 102 2.3% BR6OX2/CYP85A2 95 2.14% CYP71 82 1.85% NMT 66 1.49% CODM/T6ODM 65 1.46% STR 64 1.44% CAD 61 1.37% GES 57 1.28% LAC 57 1.28% TPS 57 1.28% CAS 50 1.13% BBE 46 1.04% HCT 45 1.01% CYP90D1 45 1.01% 7DLH 43 0.97% IFR 41 0.92% SMT1/SMT2/SMT3 41 0.92% TRI/TRII 38 0.86% RAS 38 0.86% GS 37 0.83% PYKS 36 0.81% H6H 36 0.81% TAT 33 0.74% PMT 32 0.72% ANR 29 0.65% CSE 29 0.65% CYP51G1 28 0.63% T16H 27 0.61% SLS 26 0.59% NCS 25 0.56% LAMT 23 0.52% CCR 22 0.5% FNS 21 0.47% COMT 21 0.47% CPD/CYP90A1 19 0.43% BR6OX1/CYP85A1 18 0.41% G8O/G8H 17 0.38% 16OMT 17 0.38% IO 16 0.36% F3'5'H/CYP75A 16 0.36% FPPS 14 0.32% CYP80B1 12 0.27% CNMT 12 0.27% SGD 12 0.27% PAL 12 0.27% F5H/CYP84A 12 0.27% 8HGO 11 0.25% CCoAOMT 10 0.23% ROT3/CYP90C1 10 0.23% GGPPS 10 0.23% MPO 9 0.2% CYP719 9 0.2% DFR 9 0.2% ANS/LDOX 9 0.2% CHS 9 0.2% COR 8 0.18% AACT 8 0.18% HPPR 7 0.16% HMGR 7 0.16% DXS 6 0.14% CPR 5 0.11% SQS/FDFT1 5 0.11% MCT/IspD 5 0.11% MVD 5 0.11% MVK 5 0.11% TYDC_DDC 4 0.09% CHI 4 0.09% SMO1/SMO2 4 0.09% SQE 4 0.09% DET2 4 0.09% ADC 3 0.07% 6OMT_4OMT_SOMT 3 0.07% ISY 3 0.07% CYP80F1 3 0.07% DWF1 3 0.07% HDR/IspH 3 0.07% IDI 3 0.07% XMT_MXMT_DXMT 2 0.05% TDC 2 0.05% FK 2 0.05% CPI1 2 0.05% CMK/IspE 2 0.05% HDS/IspG 2 0.05% ODC 1 0.02% DWF5 1 0.02% DWF7 1 0.02% HYD1 1 0.02% HMGS 1 0.02% PMK 1 0.02% MDS/IspF 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 542 19 BAHD (187) View species results
Alkaloid pathway 330 20 7DLGT (84) View species results
Phenylpropanoid pathway 299 11 POD (118) View species results
Flavonoid pathway 245 11 UFGT (179) View species results
Rosmarinic acid pathway 177 7 C4H (91) View species results
Steroid pathway 81 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1940 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 325 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
Smil01G0016310.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Smil01G0016320.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Smil01G0016330.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Smil03G0030970.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Smil05G0009500.1 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
Smil05G0024250.1 Terpenoid FPPS low borderline FPPS__00005__sp_P34802_GGPP1_ARATH
Smil05G0024290.1 Terpenoid FPPS medium borderline FPPS__00005__sp_P34802_GGPP1_ARATH
Smil06G0005160.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Smil06G0006010.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Smil06G0020800.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Smil06G0020810.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Smil07G0020540.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
SmilGWHAOSJ000008880013010.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
SmilGWHAOSJ000008880013020.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC