Salvia miltiorrhiza (salvia_miltiorrhiza)
Imported from atlas release summary for Salvia miltiorrhiza.
1674
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1674
Candidate Genes
C3'H/CYP98A
7.51%
C4H
6.96%
BAHD
5.45%
T3O
4.69%
UGT
4.35%
UFGT
4.33%
7DLGT
4.28%
IFS
4.17%
Other Families
58.26%
More Families (96)
CYP76
175
3.94%
4CL
130
2.93%
F3'H/CYP75B
126
2.84%
DWF4/CYP90B1
126
2.84%
POD
125
2.82%
F3H
102
2.3%
BR6OX2/CYP85A2
95
2.14%
CYP71
82
1.85%
NMT
66
1.49%
CODM/T6ODM
65
1.46%
STR
64
1.44%
CAD
61
1.37%
GES
57
1.28%
LAC
57
1.28%
TPS
57
1.28%
CAS
50
1.13%
BBE
46
1.04%
HCT
45
1.01%
CYP90D1
45
1.01%
7DLH
43
0.97%
IFR
41
0.92%
SMT1/SMT2/SMT3
41
0.92%
TRI/TRII
38
0.86%
RAS
38
0.86%
GS
37
0.83%
PYKS
36
0.81%
H6H
36
0.81%
TAT
33
0.74%
PMT
32
0.72%
ANR
29
0.65%
CSE
29
0.65%
CYP51G1
28
0.63%
T16H
27
0.61%
SLS
26
0.59%
NCS
25
0.56%
LAMT
23
0.52%
CCR
22
0.5%
FNS
21
0.47%
COMT
21
0.47%
CPD/CYP90A1
19
0.43%
BR6OX1/CYP85A1
18
0.41%
G8O/G8H
17
0.38%
16OMT
17
0.38%
IO
16
0.36%
F3'5'H/CYP75A
16
0.36%
FPPS
14
0.32%
CYP80B1
12
0.27%
CNMT
12
0.27%
SGD
12
0.27%
PAL
12
0.27%
F5H/CYP84A
12
0.27%
8HGO
11
0.25%
CCoAOMT
10
0.23%
ROT3/CYP90C1
10
0.23%
GGPPS
10
0.23%
MPO
9
0.2%
CYP719
9
0.2%
DFR
9
0.2%
ANS/LDOX
9
0.2%
CHS
9
0.2%
COR
8
0.18%
AACT
8
0.18%
HPPR
7
0.16%
HMGR
7
0.16%
DXS
6
0.14%
CPR
5
0.11%
SQS/FDFT1
5
0.11%
MCT/IspD
5
0.11%
MVD
5
0.11%
MVK
5
0.11%
TYDC_DDC
4
0.09%
CHI
4
0.09%
SMO1/SMO2
4
0.09%
SQE
4
0.09%
DET2
4
0.09%
ADC
3
0.07%
6OMT_4OMT_SOMT
3
0.07%
ISY
3
0.07%
CYP80F1
3
0.07%
DWF1
3
0.07%
HDR/IspH
3
0.07%
IDI
3
0.07%
XMT_MXMT_DXMT
2
0.05%
TDC
2
0.05%
FK
2
0.05%
CPI1
2
0.05%
CMK/IspE
2
0.05%
HDS/IspG
2
0.05%
ODC
1
0.02%
DWF5
1
0.02%
DWF7
1
0.02%
HYD1
1
0.02%
HMGS
1
0.02%
PMK
1
0.02%
MDS/IspF
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 542 | 19 | BAHD (187) | View species results |
| Alkaloid pathway | 330 | 20 | 7DLGT (84) | View species results |
| Phenylpropanoid pathway | 299 | 11 | POD (118) | View species results |
| Flavonoid pathway | 245 | 11 | UFGT (179) | View species results |
| Rosmarinic acid pathway | 177 | 7 | C4H (91) | View species results |
| Steroid pathway | 81 | 11 | CAS (37) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1940 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 325 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Smil00G0002040.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Smil01G0001480.1 | Alkaloid | NCS | low | borderline | NCS__00005__sp_Q67A25_NCS_THLFG |
| Smil03G0003320.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Smil03G0008540.1 | Alkaloid | NCS | medium | pass | NCS__00005__sp_Q67A25_NCS_THLFG |
| Smil03G0016100.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Smil03G0016750.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Smil04G0015930.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Smil04G0015950.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Smil04G0025080.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Smil04G0025110.1 | Alkaloid | NCS | medium | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Smil04G0025130.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Smil04G0025140.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Smil04G0025150.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Smil04G0025160.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Smil05G0001100.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Smil05G0001110.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Smil05G0004250.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Smil05G0007710.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Smil05G0008530.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Smil05G0015560.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Smil05G0019040.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Smil05G0019060.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Smil06G0016520.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Smil06G0016540.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Smil06G0024710.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |