PlantSME Plant secondary metabolism enzyme database

Salvia miltiorrhiza (salvia_miltiorrhiza)

Imported from atlas release summary for Salvia miltiorrhiza.

1674
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.38% Alkaloid pathway 19.71% Phenylpropanoid pathway 17.86% Flavonoid pathway 14.64% Rosmarinic acid pathway 10.57% Steroid pathway 4.84%
Family Distribution
C3'H/CYP98A 7.51% C4H 6.96% BAHD 5.45% T3O 4.69% UGT 4.35% UFGT 4.33% 7DLGT 4.28% IFS 4.17%
Other Families 58.26%
More Families (96)
CYP76 175 3.94% 4CL 130 2.93% F3'H/CYP75B 126 2.84% DWF4/CYP90B1 126 2.84% POD 125 2.82% F3H 102 2.3% BR6OX2/CYP85A2 95 2.14% CYP71 82 1.85% NMT 66 1.49% CODM/T6ODM 65 1.46% STR 64 1.44% CAD 61 1.37% GES 57 1.28% LAC 57 1.28% TPS 57 1.28% CAS 50 1.13% BBE 46 1.04% HCT 45 1.01% CYP90D1 45 1.01% 7DLH 43 0.97% IFR 41 0.92% SMT1/SMT2/SMT3 41 0.92% TRI/TRII 38 0.86% RAS 38 0.86% GS 37 0.83% PYKS 36 0.81% H6H 36 0.81% TAT 33 0.74% PMT 32 0.72% ANR 29 0.65% CSE 29 0.65% CYP51G1 28 0.63% T16H 27 0.61% SLS 26 0.59% NCS 25 0.56% LAMT 23 0.52% CCR 22 0.5% FNS 21 0.47% COMT 21 0.47% CPD/CYP90A1 19 0.43% BR6OX1/CYP85A1 18 0.41% G8O/G8H 17 0.38% 16OMT 17 0.38% IO 16 0.36% F3'5'H/CYP75A 16 0.36% FPPS 14 0.32% CYP80B1 12 0.27% CNMT 12 0.27% SGD 12 0.27% PAL 12 0.27% F5H/CYP84A 12 0.27% 8HGO 11 0.25% CCoAOMT 10 0.23% ROT3/CYP90C1 10 0.23% GGPPS 10 0.23% MPO 9 0.2% CYP719 9 0.2% DFR 9 0.2% ANS/LDOX 9 0.2% CHS 9 0.2% COR 8 0.18% AACT 8 0.18% HPPR 7 0.16% HMGR 7 0.16% DXS 6 0.14% CPR 5 0.11% SQS/FDFT1 5 0.11% MCT/IspD 5 0.11% MVD 5 0.11% MVK 5 0.11% TYDC_DDC 4 0.09% CHI 4 0.09% SMO1/SMO2 4 0.09% SQE 4 0.09% DET2 4 0.09% ADC 3 0.07% 6OMT_4OMT_SOMT 3 0.07% ISY 3 0.07% CYP80F1 3 0.07% DWF1 3 0.07% HDR/IspH 3 0.07% IDI 3 0.07% XMT_MXMT_DXMT 2 0.05% TDC 2 0.05% FK 2 0.05% CPI1 2 0.05% CMK/IspE 2 0.05% HDS/IspG 2 0.05% ODC 1 0.02% DWF5 1 0.02% DWF7 1 0.02% HYD1 1 0.02% HMGS 1 0.02% PMK 1 0.02% MDS/IspF 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 542 19 BAHD (187) View species results
Alkaloid pathway 330 20 7DLGT (84) View species results
Phenylpropanoid pathway 299 11 POD (118) View species results
Flavonoid pathway 245 11 UFGT (179) View species results
Rosmarinic acid pathway 177 7 C4H (91) View species results
Steroid pathway 81 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1940 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 325 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Smil05G0032240.1 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Smil06G0003770.1 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Smil06G0017460.1 Alkaloid NMT medium borderline NMT__00006__sp_A0A6C0WW38_CKCS_CAMSB
Smil06G0021260.1 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Smil06G0029450.1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Smil07G0002110.1 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Smil07G0006330.1 Alkaloid NMT medium borderline NMT__00060__sp_Q9MAT5_ANM10_ARATH
Smil07G0012060.1 Alkaloid NMT medium borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
Smil07G0012990.1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Smil07G0014700.1 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Smil07G0014830.1 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Smil07G0020590.1 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
SmilGWHAOSJ000000390000210.1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
SmilGWHAOSJ000006510008720.1 Alkaloid NMT medium borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
SmilGWHAOSJ000007890011070.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
SmilGWHAOSJ000008780012760.1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH