Salvia miltiorrhiza (salvia_miltiorrhiza)
Imported from atlas release summary for Salvia miltiorrhiza.
1674
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1674
Candidate Genes
C3'H/CYP98A
7.51%
C4H
6.96%
BAHD
5.45%
T3O
4.69%
UGT
4.35%
UFGT
4.33%
7DLGT
4.28%
IFS
4.17%
Other Families
58.26%
More Families (96)
CYP76
175
3.94%
4CL
130
2.93%
F3'H/CYP75B
126
2.84%
DWF4/CYP90B1
126
2.84%
POD
125
2.82%
F3H
102
2.3%
BR6OX2/CYP85A2
95
2.14%
CYP71
82
1.85%
NMT
66
1.49%
CODM/T6ODM
65
1.46%
STR
64
1.44%
CAD
61
1.37%
GES
57
1.28%
LAC
57
1.28%
TPS
57
1.28%
CAS
50
1.13%
BBE
46
1.04%
HCT
45
1.01%
CYP90D1
45
1.01%
7DLH
43
0.97%
IFR
41
0.92%
SMT1/SMT2/SMT3
41
0.92%
TRI/TRII
38
0.86%
RAS
38
0.86%
GS
37
0.83%
PYKS
36
0.81%
H6H
36
0.81%
TAT
33
0.74%
PMT
32
0.72%
ANR
29
0.65%
CSE
29
0.65%
CYP51G1
28
0.63%
T16H
27
0.61%
SLS
26
0.59%
NCS
25
0.56%
LAMT
23
0.52%
CCR
22
0.5%
FNS
21
0.47%
COMT
21
0.47%
CPD/CYP90A1
19
0.43%
BR6OX1/CYP85A1
18
0.41%
G8O/G8H
17
0.38%
16OMT
17
0.38%
IO
16
0.36%
F3'5'H/CYP75A
16
0.36%
FPPS
14
0.32%
CYP80B1
12
0.27%
CNMT
12
0.27%
SGD
12
0.27%
PAL
12
0.27%
F5H/CYP84A
12
0.27%
8HGO
11
0.25%
CCoAOMT
10
0.23%
ROT3/CYP90C1
10
0.23%
GGPPS
10
0.23%
MPO
9
0.2%
CYP719
9
0.2%
DFR
9
0.2%
ANS/LDOX
9
0.2%
CHS
9
0.2%
COR
8
0.18%
AACT
8
0.18%
HPPR
7
0.16%
HMGR
7
0.16%
DXS
6
0.14%
CPR
5
0.11%
SQS/FDFT1
5
0.11%
MCT/IspD
5
0.11%
MVD
5
0.11%
MVK
5
0.11%
TYDC_DDC
4
0.09%
CHI
4
0.09%
SMO1/SMO2
4
0.09%
SQE
4
0.09%
DET2
4
0.09%
ADC
3
0.07%
6OMT_4OMT_SOMT
3
0.07%
ISY
3
0.07%
CYP80F1
3
0.07%
DWF1
3
0.07%
HDR/IspH
3
0.07%
IDI
3
0.07%
XMT_MXMT_DXMT
2
0.05%
TDC
2
0.05%
FK
2
0.05%
CPI1
2
0.05%
CMK/IspE
2
0.05%
HDS/IspG
2
0.05%
ODC
1
0.02%
DWF5
1
0.02%
DWF7
1
0.02%
HYD1
1
0.02%
HMGS
1
0.02%
PMK
1
0.02%
MDS/IspF
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 542 | 19 | BAHD (187) | View species results |
| Alkaloid pathway | 330 | 20 | 7DLGT (84) | View species results |
| Phenylpropanoid pathway | 299 | 11 | POD (118) | View species results |
| Flavonoid pathway | 245 | 11 | UFGT (179) | View species results |
| Rosmarinic acid pathway | 177 | 7 | C4H (91) | View species results |
| Steroid pathway | 81 | 11 | CAS (37) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1940 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 325 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Smil00G0001930.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Smil00G0001980.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Smil00G0003400.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Smil00G0003410.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Smil00G0007090.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Smil00G0007100.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Smil00G0008800.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Smil00G0008850.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Smil00G0010520.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Smil00G0011350.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Smil00G0018140.1 | Phenylpropanoid | POD | medium | pass | POD__00003__sp_A9PCL4_PRX2_POPTR |
| Smil00G0020330.1 | Phenylpropanoid | POD | medium | pass | POD__00016__sp_Q6QPJ6_PRXQ_POPJC |
| Smil00G0021500.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Smil00G0021510.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Smil00G0025470.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Smil00G0028060.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Smil00G0029440.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Smil00G0034600.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Smil00G0034990.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Smil00G0040070.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Smil00G0041400.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Smil00G0041410.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Smil00G0042290.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Smil01G0000540.1 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| Smil01G0004050.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Smil01G0004060.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Smil01G0014660.1 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| Smil01G0015010.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Smil01G0015250.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Smil01G0021300.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Smil01G0023140.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Smil01G0024470.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Smil01G0027830.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Smil01G0028050.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Smil01G0028060.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Smil02G0002880.1 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| Smil02G0003390.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Smil02G0008360.1 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| Smil02G0013970.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Smil02G0014330.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Smil02G0019190.1 | Phenylpropanoid | POD | low | borderline | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Smil02G0021460.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Smil02G0021480.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Smil02G0025650.1 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| Smil02G0025890.1 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| Smil02G0027690.1 | Phenylpropanoid | POD | medium | pass | POD__00025__sp_Q9SRZ4_PRX2C_ARATH |
| Smil02G0028120.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Smil02G0028130.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Smil02G0028140.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Smil02G0029650.1 | Phenylpropanoid | POD | low | borderline | POD__00008__sp_P52574_REHY_SYNRU |