Schistidium cupulare (schistidium_cupulare)
Imported from atlas release summary for Schistidium cupulare.
552
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
552
Candidate Genes
C4H
7.12%
C3'H/CYP98A
5.81%
BAHD
5.81%
POD
5.49%
4CL
4.7%
CYP76
4.7%
NMT
4.64%
IFS
3.27%
Other Families
58.46%
More Families (95)
STR
45
2.94%
T3O
41
2.68%
BR6OX2/CYP85A2
37
2.42%
IFR
35
2.29%
F3H
35
2.29%
DWF4/CYP90B1
34
2.22%
F3'H/CYP75B
30
1.96%
GS
28
1.83%
CODM/T6ODM
28
1.83%
PAL
27
1.76%
IO
23
1.5%
UGT
22
1.44%
CYP71
21
1.37%
7DLGT
20
1.31%
PYKS
20
1.31%
UFGT
20
1.31%
CAD
18
1.18%
SMT1/SMT2/SMT3
18
1.18%
G8O/G8H
16
1.05%
H6H
14
0.91%
F3'5'H/CYP75A
14
0.91%
T16H
13
0.85%
SLS
12
0.78%
LAC
12
0.78%
CSE
12
0.78%
RAS
12
0.78%
TRI/TRII
11
0.72%
FNS
11
0.72%
HCT
11
0.72%
COMT
11
0.72%
CHS
10
0.65%
CAS
10
0.65%
SGD
9
0.59%
8HGO
8
0.52%
CCR
8
0.52%
SQS/FDFT1
8
0.52%
CYP719
7
0.46%
7DLH
7
0.46%
CNMT
7
0.46%
CYP90D1
7
0.46%
COR
6
0.39%
16OMT
6
0.39%
ANR
6
0.39%
CPR
6
0.39%
BR6OX1/CYP85A1
6
0.39%
CPD/CYP90A1
6
0.39%
MVK
6
0.39%
MPO
5
0.33%
PMT
5
0.33%
TDC
5
0.33%
NCS
5
0.33%
F5H/CYP84A
5
0.33%
SQE
5
0.33%
DWF5
5
0.33%
GGPPS
5
0.33%
BBE
4
0.26%
ANS/LDOX
4
0.26%
DFR
4
0.26%
DET2
4
0.26%
AACT
4
0.26%
ADC
3
0.2%
LAMT
3
0.2%
CHI
3
0.2%
TAT
3
0.2%
CYP51G1
3
0.2%
MCT/IspD
3
0.2%
MVD
3
0.2%
6OMT_4OMT_SOMT
2
0.13%
TYDC_DDC
2
0.13%
CCoAOMT
2
0.13%
HPPR
2
0.13%
SMO1/SMO2
2
0.13%
ROT3/CYP90C1
2
0.13%
HYD1
2
0.13%
MDS/IspF
2
0.13%
HDR/IspH
2
0.13%
CMK/IspE
2
0.13%
FPPS
2
0.13%
DXR
2
0.13%
XMT_MXMT_DXMT
1
0.07%
CYP80B1
1
0.07%
ISY
1
0.07%
GES
1
0.07%
FLS
1
0.07%
FK
1
0.07%
CPI1
1
0.07%
DWF7
1
0.07%
DWF1
1
0.07%
HDS/IspG
1
0.07%
PMK
1
0.07%
DXS
1
0.07%
HMGR
1
0.07%
HMGS
1
0.07%
IDI
1
0.07%
TPS
1
0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 151 | 11 | POD (77) | View species results |
| Terpenoid pathway | 141 | 19 | BAHD (61) | View species results |
| Alkaloid pathway | 109 | 18 | NMT (21) | View species results |
| Flavonoid pathway | 59 | 8 | UFGT (18) | View species results |
| Rosmarinic acid pathway | 56 | 7 | C4H (19) | View species results |
| Steroid pathway | 36 | 12 | CAS (9) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 605 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 112 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Scup1855850154740 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Scup1858770163950 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Scup1858860164290 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Scup1859030164750 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Scup1859210165160 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Scup1859650166320 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Scup1859860167150 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Scup1861100171350 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Scup1861600172600 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Scup1861900173740 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Scup1862510175460 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| Scup1864500182710 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Scup1865260185900 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Scup1866840192210 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Scup1867480195680 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Scup1868180198720 | Alkaloid | NMT | low | borderline | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Scup1869300203730 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Scup1870920211570 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Scup1871630214620 | Alkaloid | NMT | low | borderline | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Scup1872950220450 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Scup1875970225080 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |