PlantSME Plant secondary metabolism enzyme database

Schistidium cupulare (schistidium_cupulare)

Imported from atlas release summary for Schistidium cupulare.

552
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.36% Terpenoid pathway 25.54% Alkaloid pathway 19.75% Flavonoid pathway 10.69% Rosmarinic acid pathway 10.14% Steroid pathway 6.52%
Family Distribution
C4H 7.12% C3'H/CYP98A 5.81% BAHD 5.81% POD 5.49% 4CL 4.7% CYP76 4.7% NMT 4.64% IFS 3.27%
Other Families 58.46%
More Families (95)
STR 45 2.94% T3O 41 2.68% BR6OX2/CYP85A2 37 2.42% IFR 35 2.29% F3H 35 2.29% DWF4/CYP90B1 34 2.22% F3'H/CYP75B 30 1.96% GS 28 1.83% CODM/T6ODM 28 1.83% PAL 27 1.76% IO 23 1.5% UGT 22 1.44% CYP71 21 1.37% 7DLGT 20 1.31% PYKS 20 1.31% UFGT 20 1.31% CAD 18 1.18% SMT1/SMT2/SMT3 18 1.18% G8O/G8H 16 1.05% H6H 14 0.91% F3'5'H/CYP75A 14 0.91% T16H 13 0.85% SLS 12 0.78% LAC 12 0.78% CSE 12 0.78% RAS 12 0.78% TRI/TRII 11 0.72% FNS 11 0.72% HCT 11 0.72% COMT 11 0.72% CHS 10 0.65% CAS 10 0.65% SGD 9 0.59% 8HGO 8 0.52% CCR 8 0.52% SQS/FDFT1 8 0.52% CYP719 7 0.46% 7DLH 7 0.46% CNMT 7 0.46% CYP90D1 7 0.46% COR 6 0.39% 16OMT 6 0.39% ANR 6 0.39% CPR 6 0.39% BR6OX1/CYP85A1 6 0.39% CPD/CYP90A1 6 0.39% MVK 6 0.39% MPO 5 0.33% PMT 5 0.33% TDC 5 0.33% NCS 5 0.33% F5H/CYP84A 5 0.33% SQE 5 0.33% DWF5 5 0.33% GGPPS 5 0.33% BBE 4 0.26% ANS/LDOX 4 0.26% DFR 4 0.26% DET2 4 0.26% AACT 4 0.26% ADC 3 0.2% LAMT 3 0.2% CHI 3 0.2% TAT 3 0.2% CYP51G1 3 0.2% MCT/IspD 3 0.2% MVD 3 0.2% 6OMT_4OMT_SOMT 2 0.13% TYDC_DDC 2 0.13% CCoAOMT 2 0.13% HPPR 2 0.13% SMO1/SMO2 2 0.13% ROT3/CYP90C1 2 0.13% HYD1 2 0.13% MDS/IspF 2 0.13% HDR/IspH 2 0.13% CMK/IspE 2 0.13% FPPS 2 0.13% DXR 2 0.13% XMT_MXMT_DXMT 1 0.07% CYP80B1 1 0.07% ISY 1 0.07% GES 1 0.07% FLS 1 0.07% FK 1 0.07% CPI1 1 0.07% DWF7 1 0.07% DWF1 1 0.07% HDS/IspG 1 0.07% PMK 1 0.07% DXS 1 0.07% HMGR 1 0.07% HMGS 1 0.07% IDI 1 0.07% TPS 1 0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 151 11 POD (77) View species results
Terpenoid pathway 141 19 BAHD (61) View species results
Alkaloid pathway 109 18 NMT (21) View species results
Flavonoid pathway 59 8 UFGT (18) View species results
Rosmarinic acid pathway 56 7 C4H (19) View species results
Steroid pathway 36 12 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 605 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 112 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status Best Target
Scup1192370003380 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Scup1365580007660 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Scup1536480010770 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
Scup1539330012020 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Scup1836490107370 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
Scup1843520121810 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Scup1847750131320 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Scup1850590139210 Alkaloid TRI/TRII medium pass TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Scup1851470141760 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Scup1861400172280 Alkaloid TRI/TRII medium pass TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Scup1866990192860 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST