PlantSME Plant secondary metabolism enzyme database

Sisymbrium irio (sisymbrium_irio)

Imported from atlas release summary for Sisymbrium irio.

1428
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.97% Alkaloid pathway 22.62% Phenylpropanoid pathway 19.26% Flavonoid pathway 12.68% Rosmarinic acid pathway 8.61% Steroid pathway 6.86%
Family Distribution
C4H 6.4% BAHD 6.23% C3'H/CYP98A 5.69% 4CL 4.23% CYP76 4.04% UGT 3.58% POD 3.52% IFS 3.5%
Other Families 62.81%
More Families (97)
UFGT 127 3.44% 7DLGT 125 3.39% T3O 115 3.12% DWF4/CYP90B1 108 2.93% F3H 104 2.82% NMT 97 2.63% F3'H/CYP75B 84 2.28% BR6OX2/CYP85A2 73 1.98% CODM/T6ODM 67 1.82% SMT1/SMT2/SMT3 61 1.65% CYP71 58 1.57% SGD 57 1.55% STR 57 1.55% TRI/TRII 54 1.46% H6H 49 1.33% CSE 44 1.19% CAS 43 1.17% F5H/CYP84A 40 1.08% CAD 36 0.98% IO 35 0.95% SLS 35 0.95% T16H 34 0.92% IFR 34 0.92% BBE 33 0.89% COMT 33 0.89% PYKS 31 0.84% TAT 30 0.81% TPS 30 0.81% GES 29 0.79% FNS 28 0.76% LAMT 25 0.68% G8O/G8H 24 0.65% ANR 24 0.65% CYP90D1 22 0.6% LAC 21 0.57% F3'5'H/CYP75A 20 0.54% 16OMT 18 0.49% CCR 18 0.49% 8HGO 17 0.46% GS 17 0.46% HCT 17 0.46% RAS 17 0.46% CPD/CYP90A1 16 0.43% BR6OX1/CYP85A1 16 0.43% ANS/LDOX 15 0.41% PAL 15 0.41% SQE 15 0.41% FPPS 14 0.38% PMT 13 0.35% 7DLH 13 0.35% GGPPS 13 0.35% COR 12 0.33% CYP51G1 12 0.33% CNMT 11 0.3% NCS 11 0.3% MPO 9 0.24% CYP80F1 8 0.22% CPR 8 0.22% XMT_MXMT_DXMT 7 0.19% CHS 6 0.16% CCoAOMT 6 0.16% SMO1/SMO2 6 0.16% ROT3/CYP90C1 6 0.16% AACT 6 0.16% CYP719 5 0.14% CYP80B1 5 0.14% DFR 5 0.14% SQS/FDFT1 5 0.14% DET2 5 0.14% CHI 4 0.11% DWF7 4 0.11% DXS 4 0.11% MVD 4 0.11% IDI 4 0.11% TDC 3 0.08% HPPR 3 0.08% HYD1 3 0.08% DWF1 3 0.08% MVK 3 0.08% HMGR 3 0.08% ISY 2 0.05% ADC 2 0.05% TYDC_DDC 2 0.05% 6OMT_4OMT_SOMT 2 0.05% FLS 2 0.05% CPI1 2 0.05% MDS/IspF 2 0.05% DXR 2 0.05% ODC 1 0.03% DWF5 1 0.03% FK 1 0.03% HDS/IspG 1 0.03% PMK 1 0.03% CMK/IspE 1 0.03% HMGS 1 0.03% MCT/IspD 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 428 19 BAHD (180) View species results
Alkaloid pathway 323 20 7DLGT (54) View species results
Phenylpropanoid pathway 275 11 POD (115) View species results
Flavonoid pathway 181 11 UFGT (116) View species results
Rosmarinic acid pathway 123 7 C4H (51) View species results
Steroid pathway 98 13 SMT1/SMT2/SMT3 (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 264 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
SiriSI_scaffold1080090820 Alkaloid GS low borderline
SiriSI_scaffold15470171860 Alkaloid GS low borderline
SiriSI_scaffold15860178090 Alkaloid GS low borderline
SiriSI_scaffold17920208330 Alkaloid GS medium pass
SiriSI_scaffold19100222270 Alkaloid GS medium pass
SiriSI_scaffold20730244080 Alkaloid GS high pass
SiriSI_scaffold21930258220 Alkaloid GS high pass
SiriSI_scaffold2420281580 Alkaloid GS medium pass
SiriSI_scaffold2620313150 Alkaloid GS low borderline
SiriSI_scaffold30200351870 Alkaloid GS low borderline
SiriSI_scaffold30440353410 Alkaloid GS high pass
SiriSI_scaffold30440353420 Alkaloid GS high pass
SiriSI_scaffold30440353430 Alkaloid GS high pass
SiriSI_scaffold6690428040 Alkaloid GS high pass
SiriSI_scaffold7440446710 Alkaloid GS low borderline
SiriSI_scaffold8220464170 Alkaloid GS low borderline
SiriSI_scaffold8450473780 Alkaloid GS high pass