Sisymbrium irio (sisymbrium_irio)
Imported from atlas release summary for Sisymbrium irio.
1428
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1428
Candidate Genes
C4H
6.4%
BAHD
6.23%
C3'H/CYP98A
5.69%
4CL
4.23%
CYP76
4.04%
UGT
3.58%
POD
3.52%
IFS
3.5%
Other Families
62.81%
More Families (97)
UFGT
127
3.44%
7DLGT
125
3.39%
T3O
115
3.12%
DWF4/CYP90B1
108
2.93%
F3H
104
2.82%
NMT
97
2.63%
F3'H/CYP75B
84
2.28%
BR6OX2/CYP85A2
73
1.98%
CODM/T6ODM
67
1.82%
SMT1/SMT2/SMT3
61
1.65%
CYP71
58
1.57%
SGD
57
1.55%
STR
57
1.55%
TRI/TRII
54
1.46%
H6H
49
1.33%
CSE
44
1.19%
CAS
43
1.17%
F5H/CYP84A
40
1.08%
CAD
36
0.98%
IO
35
0.95%
SLS
35
0.95%
T16H
34
0.92%
IFR
34
0.92%
BBE
33
0.89%
COMT
33
0.89%
PYKS
31
0.84%
TAT
30
0.81%
TPS
30
0.81%
GES
29
0.79%
FNS
28
0.76%
LAMT
25
0.68%
G8O/G8H
24
0.65%
ANR
24
0.65%
CYP90D1
22
0.6%
LAC
21
0.57%
F3'5'H/CYP75A
20
0.54%
16OMT
18
0.49%
CCR
18
0.49%
8HGO
17
0.46%
GS
17
0.46%
HCT
17
0.46%
RAS
17
0.46%
CPD/CYP90A1
16
0.43%
BR6OX1/CYP85A1
16
0.43%
ANS/LDOX
15
0.41%
PAL
15
0.41%
SQE
15
0.41%
FPPS
14
0.38%
PMT
13
0.35%
7DLH
13
0.35%
GGPPS
13
0.35%
COR
12
0.33%
CYP51G1
12
0.33%
CNMT
11
0.3%
NCS
11
0.3%
MPO
9
0.24%
CYP80F1
8
0.22%
CPR
8
0.22%
XMT_MXMT_DXMT
7
0.19%
CHS
6
0.16%
CCoAOMT
6
0.16%
SMO1/SMO2
6
0.16%
ROT3/CYP90C1
6
0.16%
AACT
6
0.16%
CYP719
5
0.14%
CYP80B1
5
0.14%
DFR
5
0.14%
SQS/FDFT1
5
0.14%
DET2
5
0.14%
CHI
4
0.11%
DWF7
4
0.11%
DXS
4
0.11%
MVD
4
0.11%
IDI
4
0.11%
TDC
3
0.08%
HPPR
3
0.08%
HYD1
3
0.08%
DWF1
3
0.08%
MVK
3
0.08%
HMGR
3
0.08%
ISY
2
0.05%
ADC
2
0.05%
TYDC_DDC
2
0.05%
6OMT_4OMT_SOMT
2
0.05%
FLS
2
0.05%
CPI1
2
0.05%
MDS/IspF
2
0.05%
DXR
2
0.05%
ODC
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
HDS/IspG
1
0.03%
PMK
1
0.03%
CMK/IspE
1
0.03%
HMGS
1
0.03%
MCT/IspD
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 428 | 19 | BAHD (180) | View species results |
| Alkaloid pathway | 323 | 20 | 7DLGT (54) | View species results |
| Phenylpropanoid pathway | 275 | 11 | POD (115) | View species results |
| Flavonoid pathway | 181 | 11 | UFGT (116) | View species results |
| Rosmarinic acid pathway | 123 | 7 | C4H (51) | View species results |
| Steroid pathway | 98 | 13 | SMT1/SMT2/SMT3 (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1453 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 264 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| SiriSI_C2204930063080 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SiriSI_C2204930063090 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SiriSI_C2221610064320 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_C2300510072080 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_C2302290072400 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold10540085050 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold11290097800 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold11290097820 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold13470135470 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold13840139920 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SiriSI_scaffold14910158640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold14910158970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold14910161040 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold14990162570 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold14990162580 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold14990162590 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold14990162610 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold15710176550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold16070183170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold16410187070 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold19340224640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold19340224660 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold19340224760 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold20020232570 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold2030235870 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold20370236910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold20490238090 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold20540240200 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold20840246840 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold21590254230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold2420280580 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold2420282990 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| SiriSI_scaffold24310288630 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold24580295530 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold24780298070 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SiriSI_scaffold24960302900 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold25210305540 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SiriSI_scaffold25210305550 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SiriSI_scaffold25680308270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold26190312930 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold27330326280 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold28260335940 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold28260335950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold30360352880 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold340361750 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold5730409970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold6880436710 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold7440448030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SiriSI_scaffold7660450710 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SiriSI_scaffold7660450720 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |