Sisymbrium irio (sisymbrium_irio)
Imported from atlas release summary for Sisymbrium irio.
1428
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1428
Candidate Genes
C4H
6.4%
BAHD
6.23%
C3'H/CYP98A
5.69%
4CL
4.23%
CYP76
4.04%
UGT
3.58%
POD
3.52%
IFS
3.5%
Other Families
62.81%
More Families (97)
UFGT
127
3.44%
7DLGT
125
3.39%
T3O
115
3.12%
DWF4/CYP90B1
108
2.93%
F3H
104
2.82%
NMT
97
2.63%
F3'H/CYP75B
84
2.28%
BR6OX2/CYP85A2
73
1.98%
CODM/T6ODM
67
1.82%
SMT1/SMT2/SMT3
61
1.65%
CYP71
58
1.57%
SGD
57
1.55%
STR
57
1.55%
TRI/TRII
54
1.46%
H6H
49
1.33%
CSE
44
1.19%
CAS
43
1.17%
F5H/CYP84A
40
1.08%
CAD
36
0.98%
IO
35
0.95%
SLS
35
0.95%
T16H
34
0.92%
IFR
34
0.92%
BBE
33
0.89%
COMT
33
0.89%
PYKS
31
0.84%
TAT
30
0.81%
TPS
30
0.81%
GES
29
0.79%
FNS
28
0.76%
LAMT
25
0.68%
G8O/G8H
24
0.65%
ANR
24
0.65%
CYP90D1
22
0.6%
LAC
21
0.57%
F3'5'H/CYP75A
20
0.54%
16OMT
18
0.49%
CCR
18
0.49%
8HGO
17
0.46%
GS
17
0.46%
HCT
17
0.46%
RAS
17
0.46%
CPD/CYP90A1
16
0.43%
BR6OX1/CYP85A1
16
0.43%
ANS/LDOX
15
0.41%
PAL
15
0.41%
SQE
15
0.41%
FPPS
14
0.38%
PMT
13
0.35%
7DLH
13
0.35%
GGPPS
13
0.35%
COR
12
0.33%
CYP51G1
12
0.33%
CNMT
11
0.3%
NCS
11
0.3%
MPO
9
0.24%
CYP80F1
8
0.22%
CPR
8
0.22%
XMT_MXMT_DXMT
7
0.19%
CHS
6
0.16%
CCoAOMT
6
0.16%
SMO1/SMO2
6
0.16%
ROT3/CYP90C1
6
0.16%
AACT
6
0.16%
CYP719
5
0.14%
CYP80B1
5
0.14%
DFR
5
0.14%
SQS/FDFT1
5
0.14%
DET2
5
0.14%
CHI
4
0.11%
DWF7
4
0.11%
DXS
4
0.11%
MVD
4
0.11%
IDI
4
0.11%
TDC
3
0.08%
HPPR
3
0.08%
HYD1
3
0.08%
DWF1
3
0.08%
MVK
3
0.08%
HMGR
3
0.08%
ISY
2
0.05%
ADC
2
0.05%
TYDC_DDC
2
0.05%
6OMT_4OMT_SOMT
2
0.05%
FLS
2
0.05%
CPI1
2
0.05%
MDS/IspF
2
0.05%
DXR
2
0.05%
ODC
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
HDS/IspG
1
0.03%
PMK
1
0.03%
CMK/IspE
1
0.03%
HMGS
1
0.03%
MCT/IspD
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 428 | 19 | BAHD (180) | View species results |
| Alkaloid pathway | 323 | 20 | 7DLGT (54) | View species results |
| Phenylpropanoid pathway | 275 | 11 | POD (115) | View species results |
| Flavonoid pathway | 181 | 11 | UFGT (116) | View species results |
| Rosmarinic acid pathway | 123 | 7 | C4H (51) | View species results |
| Steroid pathway | 98 | 13 | SMT1/SMT2/SMT3 (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1453 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 264 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| SiriSI_C1889850033610 | Alkaloid | NMT | medium | pass | NMT__00033__sp_Q5QD03_SUVH3_CHLRE |
| SiriSI_C1972030041960 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| SiriSI_C2127110056070 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| SiriSI_C2174790060690 | Alkaloid | NMT | medium | pass | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| SiriSI_C2309570073470 | Alkaloid | NMT | medium | pass | NMT__00023__sp_O82210_ANM12_ARATH |
| SiriSI_scaffold10670087120 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| SiriSI_scaffold11150095450 | Alkaloid | NMT | low | borderline | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| SiriSI_scaffold11300099520 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| SiriSI_scaffold11800107020 | Alkaloid | NMT | medium | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| SiriSI_scaffold12440117380 | Alkaloid | NMT | low | borderline | NMT__00045__sp_Q8VYX1_PEAM1_WHEAT |
| SiriSI_scaffold12500118250 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| SiriSI_scaffold1300124400 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| SiriSI_scaffold13080125720 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| SiriSI_scaffold13130127180 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| SiriSI_scaffold13210130240 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| SiriSI_scaffold13630137420 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| SiriSI_scaffold14180147270 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| SiriSI_scaffold14640152950 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| SiriSI_scaffold14680154280 | Alkaloid | NMT | medium | borderline | NMT__00058__sp_Q9FZN8_TCS1_CAMSI |
| SiriSI_scaffold1490157630 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| SiriSI_scaffold15970179490 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| SiriSI_scaffold15970181410 | Alkaloid | NMT | low | borderline | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| SiriSI_scaffold16700192720 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| SiriSI_scaffold1670191450 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| SiriSI_scaffold16960194470 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| SiriSI_scaffold19070220550 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| SiriSI_scaffold19260224110 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| SiriSI_scaffold200231020 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| SiriSI_scaffold20490239140 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| SiriSI_scaffold20900247470 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| SiriSI_scaffold20900247480 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| SiriSI_scaffold21350251310 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| SiriSI_scaffold22230259880 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| SiriSI_scaffold22490262780 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| SiriSI_scaffold22810265050 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| SiriSI_scaffold23010268670 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| SiriSI_scaffold23150271060 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| SiriSI_scaffold23800277800 | Alkaloid | NMT | medium | pass | NMT__00022__sp_O65312_MEDEA_ARATH |
| SiriSI_scaffold2420281870 | Alkaloid | NMT | low | borderline | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| SiriSI_scaffold2420282360 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| SiriSI_scaffold2420282390 | Alkaloid | NMT | medium | pass | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| SiriSI_scaffold24290286510 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| SiriSI_scaffold24430290140 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| SiriSI_scaffold24440290370 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| SiriSI_scaffold24440290600 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| SiriSI_scaffold24440292150 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| SiriSI_scaffold2450294490 | Alkaloid | NMT | low | borderline | NMT__00033__sp_Q5QD03_SUVH3_CHLRE |
| SiriSI_scaffold24580295640 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| SiriSI_scaffold26570316700 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| SiriSI_scaffold26570316910 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |