Sisymbrium irio (sisymbrium_irio)
Imported from atlas release summary for Sisymbrium irio.
1428
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1428
Candidate Genes
C4H
6.4%
BAHD
6.23%
C3'H/CYP98A
5.69%
4CL
4.23%
CYP76
4.04%
UGT
3.58%
POD
3.52%
IFS
3.5%
Other Families
62.81%
More Families (97)
UFGT
127
3.44%
7DLGT
125
3.39%
T3O
115
3.12%
DWF4/CYP90B1
108
2.93%
F3H
104
2.82%
NMT
97
2.63%
F3'H/CYP75B
84
2.28%
BR6OX2/CYP85A2
73
1.98%
CODM/T6ODM
67
1.82%
SMT1/SMT2/SMT3
61
1.65%
CYP71
58
1.57%
SGD
57
1.55%
STR
57
1.55%
TRI/TRII
54
1.46%
H6H
49
1.33%
CSE
44
1.19%
CAS
43
1.17%
F5H/CYP84A
40
1.08%
CAD
36
0.98%
IO
35
0.95%
SLS
35
0.95%
T16H
34
0.92%
IFR
34
0.92%
BBE
33
0.89%
COMT
33
0.89%
PYKS
31
0.84%
TAT
30
0.81%
TPS
30
0.81%
GES
29
0.79%
FNS
28
0.76%
LAMT
25
0.68%
G8O/G8H
24
0.65%
ANR
24
0.65%
CYP90D1
22
0.6%
LAC
21
0.57%
F3'5'H/CYP75A
20
0.54%
16OMT
18
0.49%
CCR
18
0.49%
8HGO
17
0.46%
GS
17
0.46%
HCT
17
0.46%
RAS
17
0.46%
CPD/CYP90A1
16
0.43%
BR6OX1/CYP85A1
16
0.43%
ANS/LDOX
15
0.41%
PAL
15
0.41%
SQE
15
0.41%
FPPS
14
0.38%
PMT
13
0.35%
7DLH
13
0.35%
GGPPS
13
0.35%
COR
12
0.33%
CYP51G1
12
0.33%
CNMT
11
0.3%
NCS
11
0.3%
MPO
9
0.24%
CYP80F1
8
0.22%
CPR
8
0.22%
XMT_MXMT_DXMT
7
0.19%
CHS
6
0.16%
CCoAOMT
6
0.16%
SMO1/SMO2
6
0.16%
ROT3/CYP90C1
6
0.16%
AACT
6
0.16%
CYP719
5
0.14%
CYP80B1
5
0.14%
DFR
5
0.14%
SQS/FDFT1
5
0.14%
DET2
5
0.14%
CHI
4
0.11%
DWF7
4
0.11%
DXS
4
0.11%
MVD
4
0.11%
IDI
4
0.11%
TDC
3
0.08%
HPPR
3
0.08%
HYD1
3
0.08%
DWF1
3
0.08%
MVK
3
0.08%
HMGR
3
0.08%
ISY
2
0.05%
ADC
2
0.05%
TYDC_DDC
2
0.05%
6OMT_4OMT_SOMT
2
0.05%
FLS
2
0.05%
CPI1
2
0.05%
MDS/IspF
2
0.05%
DXR
2
0.05%
ODC
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
HDS/IspG
1
0.03%
PMK
1
0.03%
CMK/IspE
1
0.03%
HMGS
1
0.03%
MCT/IspD
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 428 | 19 | BAHD (180) | View species results |
| Alkaloid pathway | 323 | 20 | 7DLGT (54) | View species results |
| Phenylpropanoid pathway | 275 | 11 | POD (115) | View species results |
| Flavonoid pathway | 181 | 11 | UFGT (116) | View species results |
| Rosmarinic acid pathway | 123 | 7 | C4H (51) | View species results |
| Steroid pathway | 98 | 13 | SMT1/SMT2/SMT3 (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1453 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 264 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| SiriSI_C1814490026580 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| SiriSI_C2090470052900 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_C2258170067510 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| SiriSI_scaffold1010078930 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| SiriSI_scaffold10560085400 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| SiriSI_scaffold10620086280 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold11190096630 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold12010110020 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| SiriSI_scaffold1230114040 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| SiriSI_scaffold13050125500 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold14180147710 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| SiriSI_scaffold15390169520 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold15390169540 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold15390169550 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold1540170330 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| SiriSI_scaffold1540170500 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold15970181050 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| SiriSI_scaffold15970181520 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| SiriSI_scaffold16410187440 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| SiriSI_scaffold16700191860 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| SiriSI_scaffold17090196220 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| SiriSI_scaffold17170199410 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| SiriSI_scaffold17270201890 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| SiriSI_scaffold2020233880 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| SiriSI_scaffold20900247410 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| SiriSI_scaffold23040269020 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| SiriSI_scaffold24150280300 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| SiriSI_scaffold24150280320 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| SiriSI_scaffold24150280330 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| SiriSI_scaffold270321280 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| SiriSI_scaffold270321290 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| SiriSI_scaffold27460328970 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold27460328980 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold27460329000 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold2760330470 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| SiriSI_scaffold28410338260 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold28440338320 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold28440338330 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold28440338340 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold28440338350 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold28440338370 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold28460338470 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| SiriSI_scaffold28510339690 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| SiriSI_scaffold3240358360 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| SiriSI_scaffold4650385990 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold4690387030 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| SiriSI_scaffold4810390920 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| SiriSI_scaffold6700429900 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| SiriSI_scaffold6800431830 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| SiriSI_scaffold6890437210 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |