Sisymbrium irio (sisymbrium_irio)
Imported from atlas release summary for Sisymbrium irio.
1806
Candidate Protein Records
1428
Pathway-Level Records
3689
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3689
Family-Level Calls
C4H
6.4%
BAHD
6.23%
C3'H/CYP98A
5.69%
4CL
4.23%
CYP76
4.04%
UGT
3.58%
POD
3.52%
IFS
3.5%
Other Families
62.81%
More Families (97)
UFGT
127
3.44%
7DLGT
125
3.39%
T3O
115
3.12%
DWF4/CYP90B1
108
2.93%
F3H
104
2.82%
NMT
97
2.63%
F3'H/CYP75B
84
2.28%
BR6OX2/CYP85A2
73
1.98%
CODM/T6ODM
67
1.82%
SMT1/SMT2/SMT3
61
1.65%
CYP71
58
1.57%
SGD
57
1.55%
STR
57
1.55%
TRI/TRII
54
1.46%
H6H
49
1.33%
CSE
44
1.19%
CAS
43
1.17%
F5H/CYP84A
40
1.08%
CAD
36
0.98%
IO
35
0.95%
SLS
35
0.95%
T16H
34
0.92%
IFR
34
0.92%
BBE
33
0.89%
COMT
33
0.89%
PYKS
31
0.84%
TAT
30
0.81%
TPS
30
0.81%
GES
29
0.79%
FNS
28
0.76%
LAMT
25
0.68%
G8O/G8H
24
0.65%
ANR
24
0.65%
CYP90D1
22
0.6%
LAC
21
0.57%
F3'5'H/CYP75A
20
0.54%
16OMT
18
0.49%
CCR
18
0.49%
8HGO
17
0.46%
GS
17
0.46%
HCT
17
0.46%
RAS
17
0.46%
CPD/CYP90A1
16
0.43%
BR6OX1/CYP85A1
16
0.43%
ANS/LDOX
15
0.41%
PAL
15
0.41%
SQE
15
0.41%
FPPS
14
0.38%
PMT
13
0.35%
7DLH
13
0.35%
GGPPS
13
0.35%
COR
12
0.33%
CYP51G1
12
0.33%
CNMT
11
0.3%
NCS
11
0.3%
MPO
9
0.24%
CYP80F1
8
0.22%
CPR
8
0.22%
XMT_MXMT_DXMT
7
0.19%
CHS
6
0.16%
CCoAOMT
6
0.16%
SMO1/SMO2
6
0.16%
ROT3/CYP90C1
6
0.16%
AACT
6
0.16%
CYP719
5
0.14%
CYP80B1
5
0.14%
DFR
5
0.14%
SQS/FDFT1
5
0.14%
DET2
5
0.14%
CHI
4
0.11%
DWF7
4
0.11%
DXS
4
0.11%
MVD
4
0.11%
IDI
4
0.11%
TDC
3
0.08%
HPPR
3
0.08%
HYD1
3
0.08%
DWF1
3
0.08%
MVK
3
0.08%
HMGR
3
0.08%
ISY
2
0.05%
ADC
2
0.05%
TYDC_DDC
2
0.05%
6OMT_4OMT_SOMT
2
0.05%
FLS
2
0.05%
CPI1
2
0.05%
MDS/IspF
2
0.05%
DXR
2
0.05%
ODC
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
HDS/IspG
1
0.03%
PMK
1
0.03%
CMK/IspE
1
0.03%
HMGS
1
0.03%
MCT/IspD
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 428 | 19 | BAHD (180) | View species results |
| Alkaloid pathway | 323 | 20 | 7DLGT (54) | View species results |
| Phenylpropanoid pathway | 275 | 11 | POD (115) | View species results |
| Flavonoid pathway | 181 | 11 | UFGT (116) | View species results |
| Rosmarinic acid pathway | 123 | 7 | C4H (51) | View species results |
| Steroid pathway | 98 | 13 | SMT1/SMT2/SMT3 (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1453 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 264 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| SiriSI_scaffold1210110890 | Alkaloid | MPO | medium | pass |
| SiriSI_scaffold1210110900 | Alkaloid | MPO | medium | pass |
| SiriSI_scaffold16320185990 | Alkaloid | MPO | medium | pass |
| SiriSI_scaffold18370214720 | Alkaloid | MPO | low | borderline |
| SiriSI_scaffold2030235130 | Alkaloid | MPO | high | pass |
| SiriSI_scaffold25160304620 | Alkaloid | MPO | medium | pass |
| SiriSI_scaffold8280466360 | Alkaloid | MPO | medium | pass |
| SiriSI_scaffold8280466380 | Alkaloid | MPO | medium | pass |
| SiriSI_scaffold1080090390 | Alkaloid | NCS | medium | borderline |
| SiriSI_scaffold1270121060 | Alkaloid | NCS | medium | borderline |
| SiriSI_scaffold13960144120 | Alkaloid | NCS | medium | borderline |
| SiriSI_scaffold14180147810 | Alkaloid | NCS | medium | borderline |
| SiriSI_scaffold16590190260 | Alkaloid | NCS | low | borderline |
| SiriSI_scaffold18310213570 | Alkaloid | NCS | medium | borderline |
| SiriSI_scaffold19100222240 | Alkaloid | NCS | medium | borderline |
| SiriSI_scaffold23800277930 | Alkaloid | NCS | medium | borderline |
| SiriSI_scaffold28810341240 | Alkaloid | NCS | medium | borderline |
| SiriSI_scaffold30560353960 | Alkaloid | NCS | medium | borderline |
| SiriSI_scaffold8480475120 | Alkaloid | NCS | medium | borderline |
| SiriSI_C1889850033610 | Alkaloid | NMT | medium | pass |
| SiriSI_C1972030041960 | Alkaloid | NMT | medium | pass |
| SiriSI_C2127110056070 | Alkaloid | NMT | medium | borderline |
| SiriSI_C2174790060690 | Alkaloid | NMT | medium | pass |
| SiriSI_C2309570073470 | Alkaloid | NMT | medium | pass |
| SiriSI_scaffold10670087120 | Alkaloid | NMT | medium | borderline |
| SiriSI_scaffold11150095450 | Alkaloid | NMT | low | borderline |
| SiriSI_scaffold11300099520 | Alkaloid | NMT | medium | pass |
| SiriSI_scaffold11800107020 | Alkaloid | NMT | medium | borderline |
| SiriSI_scaffold12440117380 | Alkaloid | NMT | low | borderline |
| SiriSI_scaffold12500118250 | Alkaloid | NMT | low | borderline |
| SiriSI_scaffold1300124400 | Alkaloid | NMT | medium | borderline |
| SiriSI_scaffold13080125720 | Alkaloid | NMT | medium | pass |
| SiriSI_scaffold13130127180 | Alkaloid | NMT | medium | pass |
| SiriSI_scaffold13210130240 | Alkaloid | NMT | medium | pass |
| SiriSI_scaffold13630137420 | Alkaloid | NMT | medium | borderline |
| SiriSI_scaffold14180147270 | Alkaloid | NMT | medium | borderline |
| SiriSI_scaffold14640152950 | Alkaloid | NMT | medium | pass |
| SiriSI_scaffold14680154280 | Alkaloid | NMT | medium | borderline |
| SiriSI_scaffold1490157630 | Alkaloid | NMT | low | borderline |
| SiriSI_scaffold15970179490 | Alkaloid | NMT | low | borderline |
| SiriSI_scaffold15970181410 | Alkaloid | NMT | low | borderline |
| SiriSI_scaffold16700192720 | Alkaloid | NMT | medium | pass |
| SiriSI_scaffold1670191450 | Alkaloid | NMT | medium | pass |
| SiriSI_scaffold16960194470 | Alkaloid | NMT | low | borderline |
| SiriSI_scaffold19070220550 | Alkaloid | NMT | medium | pass |
| SiriSI_scaffold19260224110 | Alkaloid | NMT | medium | pass |
| SiriSI_scaffold200231020 | Alkaloid | NMT | medium | pass |
| SiriSI_scaffold20490239140 | Alkaloid | NMT | medium | pass |
| SiriSI_scaffold20900247470 | Alkaloid | NMT | medium | pass |
| SiriSI_scaffold20900247480 | Alkaloid | NMT | medium | pass |