PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

2234
Candidate Protein Records
1896
Pathway-Level Records
4749
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 29.8% Alkaloid pathway 20.99% Phenylpropanoid pathway 20.15% Flavonoid pathway 14.03% Rosmarinic acid pathway 9.28% Steroid pathway 5.75%
Family Distribution
C4H 6.51% C3'H/CYP98A 5.9% BAHD 5.33% UGT 4.82% 7DLGT 4.23% UFGT 4.0% CYP76 3.77% T3O 3.64%
Other Families 61.8%
More Families (98)
POD 168 3.54% 4CL 165 3.47% IFS 163 3.43% F3H 154 3.24% F3'H/CYP75B 115 2.42% H6H 106 2.23% DWF4/CYP90B1 104 2.19% BR6OX2/CYP85A2 98 2.06% NMT 90 1.9% CODM/T6ODM 88 1.85% CYP71 80 1.68% STR 73 1.54% SMT1/SMT2/SMT3 67 1.41% TPS 57 1.2% CAD 56 1.18% TRI/TRII 53 1.12% GES 51 1.07% PAL 51 1.07% TAT 47 0.99% LAC 44 0.93% CAS 44 0.93% T16H 41 0.86% CSE 38 0.8% BBE 35 0.74% FNS 34 0.72% CYP90D1 34 0.72% 7DLH 33 0.69% PYKS 32 0.67% G8O/G8H 32 0.67% HCT 32 0.67% SLS 31 0.65% IFR 31 0.65% F5H/CYP84A 30 0.63% CCoAOMT 30 0.63% GS 29 0.61% SGD 26 0.55% IO 26 0.55% 8HGO 26 0.55% TYDC_DDC 25 0.53% COMT 25 0.53% ANR 23 0.48% CCR 23 0.48% RAS 23 0.48% F3'5'H/CYP75A 22 0.46% BR6OX1/CYP85A1 22 0.46% 16OMT 21 0.44% LAMT 21 0.44% PMT 21 0.44% ANS/LDOX 21 0.44% CPD/CYP90A1 19 0.4% NCS 16 0.34% DFR 16 0.34% CYP51G1 16 0.34% FPPS 13 0.27% CNMT 12 0.25% COR 10 0.21% SQS/FDFT1 9 0.19% MPO 8 0.17% CYP719 8 0.17% CHS 8 0.17% SQE 8 0.17% ROT3/CYP90C1 8 0.17% GGPPS 8 0.17% CYP80B1 7 0.15% HPPR 7 0.15% TDC 6 0.13% CPR 6 0.13% DET2 6 0.13% HMGR 6 0.13% MVD 6 0.13% AACT 6 0.13% ISY 5 0.11% SMO1/SMO2 5 0.11% CHI 4 0.08% MVK 4 0.08% DXS 4 0.08% HMGS 4 0.08% 6OMT_4OMT_SOMT 3 0.06% CYP80F1 3 0.06% ODC 3 0.06% DWF7 3 0.06% XMT_MXMT_DXMT 2 0.04% ADC 2 0.04% FLS 2 0.04% DWF5 2 0.04% DWF1 2 0.04% HYD1 2 0.04% GPPS 2 0.04% DXR 2 0.04% IDI 2 0.04% PMK 2 0.04% FK 1 0.02% CPI1 1 0.02% CMK/IspE 1 0.02% MCT/IspD 1 0.02% HDR/IspH 1 0.02% MDS/IspF 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Slyc12G0022210.1 Terpenoid BAHD low borderline BAHD__00015__sp_D2Y3X2_PUN1_CAPAN
Slyc12G0023330.1 Terpenoid BAHD medium pass BAHD__00069__sp_Q9C5W0_DGAT3_ARATH
Slyc12G0023630.1 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH