PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status
Slyc01G0039430.1 Phenylpropanoid CSE medium pass
Slyc01G0041970.1 Phenylpropanoid CSE medium pass
Slyc02G0008230.1 Phenylpropanoid CSE medium pass
Slyc02G0008270.1 Phenylpropanoid CSE medium pass
Slyc02G0013400.1 Phenylpropanoid CSE medium pass
Slyc02G0016490.1 Phenylpropanoid CSE medium pass
Slyc02G0016700.1 Phenylpropanoid CSE medium pass
Slyc02G0016750.1 Phenylpropanoid CSE medium pass
Slyc02G0016760.1 Phenylpropanoid CSE medium pass
Slyc02G0016820.1 Phenylpropanoid CSE medium pass
Slyc02G0016830.1 Phenylpropanoid CSE medium pass
Slyc02G0026330.1 Phenylpropanoid CSE medium pass
Slyc02G0034070.1 Phenylpropanoid CSE medium pass
Slyc03G0001290.1 Phenylpropanoid CSE medium pass
Slyc03G0001650.1 Phenylpropanoid CSE medium pass
Slyc03G0001660.1 Phenylpropanoid CSE medium pass
Slyc03G0007680.1 Phenylpropanoid CSE medium pass
Slyc03G0007690.1 Phenylpropanoid CSE medium pass
Slyc03G0022860.1 Phenylpropanoid CSE medium pass
Slyc03G0031750.1 Phenylpropanoid CSE medium pass
Slyc04G0004580.1 Phenylpropanoid CSE medium pass
Slyc04G0023710.1 Phenylpropanoid CSE medium pass
Slyc04G0026200.1 Phenylpropanoid CSE medium pass
Slyc04G0028100.1 Phenylpropanoid CSE medium pass
Slyc05G0004620.1 Phenylpropanoid CSE medium pass
Slyc05G0008490.1 Phenylpropanoid CSE medium pass
Slyc05G0024670.1 Phenylpropanoid CSE medium pass
Slyc07G0011290.1 Phenylpropanoid CSE medium pass
Slyc07G0011300.1 Phenylpropanoid CSE medium pass
Slyc07G0016960.1 Phenylpropanoid CSE medium pass
Slyc08G0000910.1 Phenylpropanoid CSE low borderline
Slyc09G0018810.1 Phenylpropanoid CSE medium pass
Slyc11G0003410.1 Phenylpropanoid CSE medium pass
Slyc12G0017790.1 Phenylpropanoid CSE medium pass
Slyc12G0017800.1 Phenylpropanoid CSE medium pass
Slyc12G0017810.1 Phenylpropanoid CSE medium pass
Slyc12G0019960.1 Phenylpropanoid CSE medium pass
Slyc12G0021120.1 Phenylpropanoid CSE medium pass