PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
Slyc00G0004180.1 Alkaloid T16H medium borderline
Slyc01G0002920.1 Alkaloid T16H medium borderline
Slyc02G0014070.1 Alkaloid T16H medium borderline
Slyc02G0025560.1 Alkaloid T16H medium borderline
Slyc03G0004600.1 Alkaloid T16H medium borderline
Slyc03G0008130.1 Alkaloid T16H medium borderline
Slyc03G0008930.1 Alkaloid T16H medium borderline
Slyc03G0010490.1 Alkaloid T16H medium pass
Slyc03G0019440.1 Alkaloid T16H medium borderline
Slyc03G0023030.1 Alkaloid T16H medium borderline
Slyc03G0023100.1 Alkaloid T16H medium borderline
Slyc03G0030210.1 Alkaloid T16H medium borderline
Slyc04G0004650.1 Alkaloid T16H medium borderline
Slyc04G0005070.1 Alkaloid T16H medium borderline
Slyc04G0012450.1 Alkaloid T16H medium borderline
Slyc04G0013210.1 Alkaloid T16H medium borderline
Slyc04G0014980.1 Alkaloid T16H low borderline
Slyc04G0016460.1 Alkaloid T16H medium pass
Slyc04G0016480.1 Alkaloid T16H low borderline
Slyc04G0024070.1 Alkaloid T16H medium borderline
Slyc04G0024850.1 Alkaloid T16H low borderline
Slyc04G0025950.1 Alkaloid T16H low borderline
Slyc05G0017900.1 Alkaloid T16H medium borderline
Slyc06G0012770.1 Alkaloid T16H medium borderline
Slyc06G0017270.1 Alkaloid T16H medium borderline
Slyc07G0019570.1 Alkaloid T16H medium borderline
Slyc07G0023250.1 Alkaloid T16H medium borderline
Slyc08G0000760.1 Alkaloid T16H medium borderline
Slyc08G0000840.1 Alkaloid T16H medium borderline
Slyc08G0007460.1 Alkaloid T16H medium borderline
Slyc08G0016650.1 Alkaloid T16H medium borderline
Slyc08G0017780.1 Alkaloid T16H medium borderline
Slyc09G0010060.1 Alkaloid T16H medium pass
Slyc09G0015830.1 Alkaloid T16H medium pass
Slyc10G0004590.1 Alkaloid T16H medium borderline
Slyc11G0001720.1 Alkaloid T16H medium borderline
Slyc11G0019430.1 Alkaloid T16H medium borderline
Slyc12G0008870.1 Alkaloid T16H medium borderline
Slyc12G0012840.1 Alkaloid T16H medium borderline
Slyc12G0016750.1 Alkaloid T16H medium borderline
Slyc12G0016770.1 Alkaloid T16H medium borderline