PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.8% Alkaloid pathway 20.99% Phenylpropanoid pathway 20.15% Flavonoid pathway 14.03% Rosmarinic acid pathway 9.28% Steroid pathway 5.75%
Family Distribution
C4H 6.51% C3'H/CYP98A 5.9% BAHD 5.33% UGT 4.82% 7DLGT 4.23% UFGT 4.0% CYP76 3.77% T3O 3.64%
Other Families 61.8%
More Families (98)
POD 168 3.54% 4CL 165 3.47% IFS 163 3.43% F3H 154 3.24% F3'H/CYP75B 115 2.42% H6H 106 2.23% DWF4/CYP90B1 104 2.19% BR6OX2/CYP85A2 98 2.06% NMT 90 1.9% CODM/T6ODM 88 1.85% CYP71 80 1.68% STR 73 1.54% SMT1/SMT2/SMT3 67 1.41% TPS 57 1.2% CAD 56 1.18% TRI/TRII 53 1.12% GES 51 1.07% PAL 51 1.07% TAT 47 0.99% LAC 44 0.93% CAS 44 0.93% T16H 41 0.86% CSE 38 0.8% BBE 35 0.74% FNS 34 0.72% CYP90D1 34 0.72% 7DLH 33 0.69% PYKS 32 0.67% G8O/G8H 32 0.67% HCT 32 0.67% SLS 31 0.65% IFR 31 0.65% F5H/CYP84A 30 0.63% CCoAOMT 30 0.63% GS 29 0.61% SGD 26 0.55% IO 26 0.55% 8HGO 26 0.55% TYDC_DDC 25 0.53% COMT 25 0.53% ANR 23 0.48% CCR 23 0.48% RAS 23 0.48% F3'5'H/CYP75A 22 0.46% BR6OX1/CYP85A1 22 0.46% 16OMT 21 0.44% LAMT 21 0.44% PMT 21 0.44% ANS/LDOX 21 0.44% CPD/CYP90A1 19 0.4% NCS 16 0.34% DFR 16 0.34% CYP51G1 16 0.34% FPPS 13 0.27% CNMT 12 0.25% COR 10 0.21% SQS/FDFT1 9 0.19% MPO 8 0.17% CYP719 8 0.17% CHS 8 0.17% SQE 8 0.17% ROT3/CYP90C1 8 0.17% GGPPS 8 0.17% CYP80B1 7 0.15% HPPR 7 0.15% TDC 6 0.13% CPR 6 0.13% DET2 6 0.13% HMGR 6 0.13% MVD 6 0.13% AACT 6 0.13% ISY 5 0.11% SMO1/SMO2 5 0.11% CHI 4 0.08% MVK 4 0.08% DXS 4 0.08% HMGS 4 0.08% 6OMT_4OMT_SOMT 3 0.06% CYP80F1 3 0.06% ODC 3 0.06% DWF7 3 0.06% XMT_MXMT_DXMT 2 0.04% ADC 2 0.04% FLS 2 0.04% DWF5 2 0.04% DWF1 2 0.04% HYD1 2 0.04% GPPS 2 0.04% DXR 2 0.04% IDI 2 0.04% PMK 2 0.04% FK 1 0.02% CPI1 1 0.02% CMK/IspE 1 0.02% MCT/IspD 1 0.02% HDR/IspH 1 0.02% MDS/IspF 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPR
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Gene Pathway Family Confidence Status Best Target
Slyc02G0003550.1 Rosmarinic Acid CPR medium pass CPR__00001__sp_A0A2U1LIM9_NCPR1_ARTAN
Slyc02G0026100.1 Rosmarinic Acid CPR low borderline CPR__00004__sp_Q0J705_NCPR2_ORYSJ
Slyc04G0021410.1 Rosmarinic Acid CPR medium pass CPR__00008__sp_Q9SB48_NCPR1_ARATH
Slyc06G0001300.1 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
Slyc06G0026680.1 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
Slyc07G0006740.1 Rosmarinic Acid CPR medium pass CPR__00009__sp_Q9SUM3_NCPR2_ARATH