PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status
Slyc07G0020370.1 Alkaloid CODM/T6ODM medium borderline
Slyc07G0020380.1 Alkaloid CODM/T6ODM medium borderline
Slyc08G0001960.1 Alkaloid CODM/T6ODM medium borderline
Slyc08G0005910.1 Alkaloid CODM/T6ODM medium borderline
Slyc08G0010760.1 Alkaloid CODM/T6ODM medium borderline
Slyc08G0010780.1 Alkaloid CODM/T6ODM medium borderline
Slyc08G0019770.1 Alkaloid CODM/T6ODM low borderline
Slyc08G0021780.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0003270.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0008660.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0021450.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0021460.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0021480.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0021490.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0021500.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0021510.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0021530.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0021540.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0021550.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0021580.1 Alkaloid CODM/T6ODM medium borderline
Slyc09G0021590.1 Alkaloid CODM/T6ODM medium borderline
Slyc10G0000370.1 Alkaloid CODM/T6ODM medium borderline
Slyc10G0002770.1 Alkaloid CODM/T6ODM medium borderline
Slyc10G0007560.1 Alkaloid CODM/T6ODM low borderline
Slyc10G0017200.1 Alkaloid CODM/T6ODM medium borderline
Slyc10G0017210.1 Alkaloid CODM/T6ODM medium borderline
Slyc10G0017370.1 Alkaloid CODM/T6ODM medium borderline
Slyc10G0025760.1 Alkaloid CODM/T6ODM medium borderline
Slyc11G0003080.1 Alkaloid CODM/T6ODM medium borderline
Slyc11G0007750.1 Alkaloid CODM/T6ODM medium borderline
Slyc11G0013310.1 Alkaloid CODM/T6ODM medium borderline
Slyc11G0013870.1 Alkaloid CODM/T6ODM low borderline
Slyc11G0023180.1 Alkaloid CODM/T6ODM medium borderline
Slyc11G0023200.1 Alkaloid CODM/T6ODM medium borderline
Slyc11G0023210.1 Alkaloid CODM/T6ODM medium borderline
Slyc12G0001420.1 Alkaloid CODM/T6ODM medium borderline
Slyc12G0005970.1 Alkaloid CODM/T6ODM medium borderline
Slyc12G0014810.1 Alkaloid CODM/T6ODM medium borderline