Solanum lycopersicum (solanum_lycopersicum)
Imported from atlas release summary for Solanum lycopersicum.
1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1896
Candidate Genes
C4H
6.51%
C3'H/CYP98A
5.9%
BAHD
5.33%
UGT
4.82%
7DLGT
4.23%
UFGT
4.0%
CYP76
3.77%
T3O
3.64%
Other Families
61.8%
More Families (98)
POD
168
3.54%
4CL
165
3.47%
IFS
163
3.43%
F3H
154
3.24%
F3'H/CYP75B
115
2.42%
H6H
106
2.23%
DWF4/CYP90B1
104
2.19%
BR6OX2/CYP85A2
98
2.06%
NMT
90
1.9%
CODM/T6ODM
88
1.85%
CYP71
80
1.68%
STR
73
1.54%
SMT1/SMT2/SMT3
67
1.41%
TPS
57
1.2%
CAD
56
1.18%
TRI/TRII
53
1.12%
GES
51
1.07%
PAL
51
1.07%
TAT
47
0.99%
LAC
44
0.93%
CAS
44
0.93%
T16H
41
0.86%
CSE
38
0.8%
BBE
35
0.74%
FNS
34
0.72%
CYP90D1
34
0.72%
7DLH
33
0.69%
PYKS
32
0.67%
G8O/G8H
32
0.67%
HCT
32
0.67%
SLS
31
0.65%
IFR
31
0.65%
F5H/CYP84A
30
0.63%
CCoAOMT
30
0.63%
GS
29
0.61%
SGD
26
0.55%
IO
26
0.55%
8HGO
26
0.55%
TYDC_DDC
25
0.53%
COMT
25
0.53%
ANR
23
0.48%
CCR
23
0.48%
RAS
23
0.48%
F3'5'H/CYP75A
22
0.46%
BR6OX1/CYP85A1
22
0.46%
16OMT
21
0.44%
LAMT
21
0.44%
PMT
21
0.44%
ANS/LDOX
21
0.44%
CPD/CYP90A1
19
0.4%
NCS
16
0.34%
DFR
16
0.34%
CYP51G1
16
0.34%
FPPS
13
0.27%
CNMT
12
0.25%
COR
10
0.21%
SQS/FDFT1
9
0.19%
MPO
8
0.17%
CYP719
8
0.17%
CHS
8
0.17%
SQE
8
0.17%
ROT3/CYP90C1
8
0.17%
GGPPS
8
0.17%
CYP80B1
7
0.15%
HPPR
7
0.15%
TDC
6
0.13%
CPR
6
0.13%
DET2
6
0.13%
HMGR
6
0.13%
MVD
6
0.13%
AACT
6
0.13%
ISY
5
0.11%
SMO1/SMO2
5
0.11%
CHI
4
0.08%
MVK
4
0.08%
DXS
4
0.08%
HMGS
4
0.08%
6OMT_4OMT_SOMT
3
0.06%
CYP80F1
3
0.06%
ODC
3
0.06%
DWF7
3
0.06%
XMT_MXMT_DXMT
2
0.04%
ADC
2
0.04%
FLS
2
0.04%
DWF5
2
0.04%
DWF1
2
0.04%
HYD1
2
0.04%
GPPS
2
0.04%
DXR
2
0.04%
IDI
2
0.04%
PMK
2
0.04%
FK
1
0.02%
CPI1
1
0.02%
CMK/IspE
1
0.02%
MCT/IspD
1
0.02%
HDR/IspH
1
0.02%
MDS/IspF
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 565 | 19 | UGT (201) | View species results |
| Alkaloid pathway | 398 | 24 | 7DLGT (94) | View species results |
| Phenylpropanoid pathway | 382 | 12 | POD (160) | View species results |
| Flavonoid pathway | 266 | 15 | UFGT (174) | View species results |
| Rosmarinic acid pathway | 176 | 7 | C4H (72) | View species results |
| Steroid pathway | 109 | 12 | SMT1/SMT2/SMT3 (47) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1833 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 308 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Slyc06G0019060.1 | Alkaloid | NMT | medium | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| Slyc06G0028410.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Slyc07G0001170.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Slyc07G0003700.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Slyc07G0003760.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Slyc07G0003770.1 | Alkaloid | NMT | low | borderline | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Slyc07G0003840.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Slyc07G0008970.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Slyc07G0016010.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Slyc07G0016400.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| Slyc07G0023830.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Slyc08G0001070.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Slyc08G0006890.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Slyc08G0013310.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Slyc08G0017880.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Slyc08G0019580.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Slyc08G0022740.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Slyc09G0002730.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Slyc09G0013410.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Slyc09G0013420.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Slyc09G0017470.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Slyc09G0019720.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Slyc09G0022280.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Slyc09G0022430.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Slyc09G0022610.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Slyc09G0025180.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Slyc10G0008330.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Slyc10G0015580.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Slyc10G0015750.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Slyc10G0016470.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Slyc10G0017590.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Slyc10G0019850.1 | Alkaloid | NMT | medium | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| Slyc10G0022590.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Slyc10G0024790.1 | Alkaloid | NMT | medium | pass | NMT__00018__sp_I1M2U5_NAMT1_SOYBN |
| Slyc11G0000750.1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Slyc12G0002900.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Slyc12G0014570.1 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Slyc12G0022400.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Slyc12G0024050.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Slyc12G0024780.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |