Solanum lycopersicum (solanum_lycopersicum)
Imported from atlas release summary for Solanum lycopersicum.
1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1896
Candidate Genes
C4H
6.51%
C3'H/CYP98A
5.9%
BAHD
5.33%
UGT
4.82%
7DLGT
4.23%
UFGT
4.0%
CYP76
3.77%
T3O
3.64%
Other Families
61.8%
More Families (98)
POD
168
3.54%
4CL
165
3.47%
IFS
163
3.43%
F3H
154
3.24%
F3'H/CYP75B
115
2.42%
H6H
106
2.23%
DWF4/CYP90B1
104
2.19%
BR6OX2/CYP85A2
98
2.06%
NMT
90
1.9%
CODM/T6ODM
88
1.85%
CYP71
80
1.68%
STR
73
1.54%
SMT1/SMT2/SMT3
67
1.41%
TPS
57
1.2%
CAD
56
1.18%
TRI/TRII
53
1.12%
GES
51
1.07%
PAL
51
1.07%
TAT
47
0.99%
LAC
44
0.93%
CAS
44
0.93%
T16H
41
0.86%
CSE
38
0.8%
BBE
35
0.74%
FNS
34
0.72%
CYP90D1
34
0.72%
7DLH
33
0.69%
PYKS
32
0.67%
G8O/G8H
32
0.67%
HCT
32
0.67%
SLS
31
0.65%
IFR
31
0.65%
F5H/CYP84A
30
0.63%
CCoAOMT
30
0.63%
GS
29
0.61%
SGD
26
0.55%
IO
26
0.55%
8HGO
26
0.55%
TYDC_DDC
25
0.53%
COMT
25
0.53%
ANR
23
0.48%
CCR
23
0.48%
RAS
23
0.48%
F3'5'H/CYP75A
22
0.46%
BR6OX1/CYP85A1
22
0.46%
16OMT
21
0.44%
LAMT
21
0.44%
PMT
21
0.44%
ANS/LDOX
21
0.44%
CPD/CYP90A1
19
0.4%
NCS
16
0.34%
DFR
16
0.34%
CYP51G1
16
0.34%
FPPS
13
0.27%
CNMT
12
0.25%
COR
10
0.21%
SQS/FDFT1
9
0.19%
MPO
8
0.17%
CYP719
8
0.17%
CHS
8
0.17%
SQE
8
0.17%
ROT3/CYP90C1
8
0.17%
GGPPS
8
0.17%
CYP80B1
7
0.15%
HPPR
7
0.15%
TDC
6
0.13%
CPR
6
0.13%
DET2
6
0.13%
HMGR
6
0.13%
MVD
6
0.13%
AACT
6
0.13%
ISY
5
0.11%
SMO1/SMO2
5
0.11%
CHI
4
0.08%
MVK
4
0.08%
DXS
4
0.08%
HMGS
4
0.08%
6OMT_4OMT_SOMT
3
0.06%
CYP80F1
3
0.06%
ODC
3
0.06%
DWF7
3
0.06%
XMT_MXMT_DXMT
2
0.04%
ADC
2
0.04%
FLS
2
0.04%
DWF5
2
0.04%
DWF1
2
0.04%
HYD1
2
0.04%
GPPS
2
0.04%
DXR
2
0.04%
IDI
2
0.04%
PMK
2
0.04%
FK
1
0.02%
CPI1
1
0.02%
CMK/IspE
1
0.02%
MCT/IspD
1
0.02%
HDR/IspH
1
0.02%
MDS/IspF
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 565 | 19 | UGT (201) | View species results |
| Alkaloid pathway | 398 | 24 | 7DLGT (94) | View species results |
| Phenylpropanoid pathway | 382 | 12 | POD (160) | View species results |
| Flavonoid pathway | 266 | 15 | UFGT (174) | View species results |
| Rosmarinic acid pathway | 176 | 7 | C4H (72) | View species results |
| Steroid pathway | 109 | 12 | SMT1/SMT2/SMT3 (47) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1833 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 308 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Slyc03G0006020.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Slyc03G0006040.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Slyc03G0006050.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Slyc03G0007550.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Slyc03G0007560.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Slyc03G0014570.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Slyc03G0018560.1 | Phenylpropanoid | POD | medium | pass | POD__00007__sp_P0C5C9_REHYA_ORYSJ |
| Slyc03G0020570.1 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Slyc03G0020850.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Slyc03G0022910.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Slyc03G0032600.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Slyc04G0002410.1 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Slyc04G0002420.1 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Slyc04G0014340.1 | Phenylpropanoid | POD | low | borderline | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Slyc04G0014350.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Slyc04G0016020.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Slyc04G0017480.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Slyc04G0018790.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Slyc04G0018800.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Slyc04G0021820.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Slyc04G0025610.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Slyc04G0026080.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Slyc04G0026250.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Slyc04G0027240.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Slyc05G0001340.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Slyc05G0005600.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Slyc05G0007900.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Slyc05G0017340.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Slyc05G0017350.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Slyc05G0017370.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Slyc05G0017380.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Slyc05G0019250.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Slyc05G0019260.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Slyc05G0020750.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Slyc05G0023900.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Slyc06G0000160.1 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| Slyc06G0000170.1 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| Slyc06G0009200.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Slyc06G0012220.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Slyc06G0012990.1 | Phenylpropanoid | POD | medium | pass | POD__00015__sp_Q69SV0_APX8_ORYSJ |
| Slyc06G0021690.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Slyc06G0021840.1 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Slyc06G0023000.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Slyc06G0023070.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Slyc06G0023080.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Slyc06G0024260.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Slyc06G0026220.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Slyc06G0026990.1 | Phenylpropanoid | POD | low | borderline | POD__00001__sp_A5H452_PER70_MAIZE |
| Slyc07G0002850.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Slyc07G0006190.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |