PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

2234
Candidate Protein Records
1896
Pathway-Level Records
4749
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Slyc03G0001660.1 Phenylpropanoid CSE medium pass
Slyc03G0007680.1 Phenylpropanoid CSE medium pass
Slyc03G0007690.1 Phenylpropanoid CSE medium pass
Slyc03G0022860.1 Phenylpropanoid CSE medium pass
Slyc03G0031750.1 Phenylpropanoid CSE medium pass
Slyc04G0004580.1 Phenylpropanoid CSE medium pass
Slyc04G0023710.1 Phenylpropanoid CSE medium pass
Slyc04G0026200.1 Phenylpropanoid CSE medium pass
Slyc04G0028100.1 Phenylpropanoid CSE medium pass
Slyc05G0004620.1 Phenylpropanoid CSE medium pass
Slyc05G0008490.1 Phenylpropanoid CSE medium pass
Slyc05G0024670.1 Phenylpropanoid CSE medium pass
Slyc07G0011290.1 Phenylpropanoid CSE medium pass
Slyc07G0011300.1 Phenylpropanoid CSE medium pass
Slyc07G0016960.1 Phenylpropanoid CSE medium pass
Slyc08G0000910.1 Phenylpropanoid CSE low borderline
Slyc09G0018810.1 Phenylpropanoid CSE medium pass
Slyc11G0003410.1 Phenylpropanoid CSE medium pass
Slyc12G0017790.1 Phenylpropanoid CSE medium pass
Slyc12G0017800.1 Phenylpropanoid CSE medium pass
Slyc12G0017810.1 Phenylpropanoid CSE medium pass
Slyc12G0019960.1 Phenylpropanoid CSE medium pass
Slyc12G0021120.1 Phenylpropanoid CSE medium pass
Slyc00G0004180.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc01G0002920.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc01G0005490.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc01G0026480.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc01G0040960.1 Phenylpropanoid F5H/CYP84A low borderline
Slyc01G0040970.1 Phenylpropanoid F5H/CYP84A low borderline
Slyc02G0025080.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc02G0031200.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc03G0008130.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc03G0008930.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc03G0021580.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc04G0002070.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc04G0013210.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc06G0006720.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc06G0006900.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc06G0012770.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc08G0000840.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc08G0014080.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc08G0015620.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc08G0017790.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc09G0014150.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc09G0015830.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc09G0020630.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc09G0024900.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc10G0004510.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc10G0008140.1 Phenylpropanoid F5H/CYP84A medium borderline
Slyc10G0023430.1 Phenylpropanoid F5H/CYP84A medium borderline