Solanum lycopersicum (solanum_lycopersicum)
Imported from atlas release summary for Solanum lycopersicum.
2234
Candidate Protein Records
1896
Pathway-Level Records
4749
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4749
Family-Level Calls
C4H
6.51%
C3'H/CYP98A
5.9%
BAHD
5.33%
UGT
4.82%
7DLGT
4.23%
UFGT
4.0%
CYP76
3.77%
T3O
3.64%
Other Families
61.8%
More Families (98)
POD
168
3.54%
4CL
165
3.47%
IFS
163
3.43%
F3H
154
3.24%
F3'H/CYP75B
115
2.42%
H6H
106
2.23%
DWF4/CYP90B1
104
2.19%
BR6OX2/CYP85A2
98
2.06%
NMT
90
1.9%
CODM/T6ODM
88
1.85%
CYP71
80
1.68%
STR
73
1.54%
SMT1/SMT2/SMT3
67
1.41%
TPS
57
1.2%
CAD
56
1.18%
TRI/TRII
53
1.12%
GES
51
1.07%
PAL
51
1.07%
TAT
47
0.99%
LAC
44
0.93%
CAS
44
0.93%
T16H
41
0.86%
CSE
38
0.8%
BBE
35
0.74%
FNS
34
0.72%
CYP90D1
34
0.72%
7DLH
33
0.69%
PYKS
32
0.67%
G8O/G8H
32
0.67%
HCT
32
0.67%
SLS
31
0.65%
IFR
31
0.65%
F5H/CYP84A
30
0.63%
CCoAOMT
30
0.63%
GS
29
0.61%
SGD
26
0.55%
IO
26
0.55%
8HGO
26
0.55%
TYDC_DDC
25
0.53%
COMT
25
0.53%
ANR
23
0.48%
CCR
23
0.48%
RAS
23
0.48%
F3'5'H/CYP75A
22
0.46%
BR6OX1/CYP85A1
22
0.46%
16OMT
21
0.44%
LAMT
21
0.44%
PMT
21
0.44%
ANS/LDOX
21
0.44%
CPD/CYP90A1
19
0.4%
NCS
16
0.34%
DFR
16
0.34%
CYP51G1
16
0.34%
FPPS
13
0.27%
CNMT
12
0.25%
COR
10
0.21%
SQS/FDFT1
9
0.19%
MPO
8
0.17%
CYP719
8
0.17%
CHS
8
0.17%
SQE
8
0.17%
ROT3/CYP90C1
8
0.17%
GGPPS
8
0.17%
CYP80B1
7
0.15%
HPPR
7
0.15%
TDC
6
0.13%
CPR
6
0.13%
DET2
6
0.13%
HMGR
6
0.13%
MVD
6
0.13%
AACT
6
0.13%
ISY
5
0.11%
SMO1/SMO2
5
0.11%
CHI
4
0.08%
MVK
4
0.08%
DXS
4
0.08%
HMGS
4
0.08%
6OMT_4OMT_SOMT
3
0.06%
CYP80F1
3
0.06%
ODC
3
0.06%
DWF7
3
0.06%
XMT_MXMT_DXMT
2
0.04%
ADC
2
0.04%
FLS
2
0.04%
DWF5
2
0.04%
DWF1
2
0.04%
HYD1
2
0.04%
GPPS
2
0.04%
DXR
2
0.04%
IDI
2
0.04%
PMK
2
0.04%
FK
1
0.02%
CPI1
1
0.02%
CMK/IspE
1
0.02%
MCT/IspD
1
0.02%
HDR/IspH
1
0.02%
MDS/IspF
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 565 | 19 | UGT (201) | View species results |
| Alkaloid pathway | 398 | 24 | 7DLGT (94) | View species results |
| Phenylpropanoid pathway | 382 | 12 | POD (160) | View species results |
| Flavonoid pathway | 266 | 15 | UFGT (174) | View species results |
| Rosmarinic acid pathway | 176 | 7 | C4H (72) | View species results |
| Steroid pathway | 109 | 12 | SMT1/SMT2/SMT3 (47) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1833 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 308 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Slyc07G0015020.1 | Alkaloid | PMT | medium | pass |
| Slyc08G0004710.1 | Alkaloid | PMT | medium | borderline |
| Slyc08G0010430.1 | Alkaloid | PMT | medium | pass |
| Slyc09G0019560.1 | Alkaloid | PMT | medium | pass |
| Slyc11G0010370.1 | Alkaloid | PMT | low | borderline |
| Slyc12G0022180.1 | Alkaloid | PMT | low | borderline |
| Slyc12G0022200.1 | Alkaloid | PMT | low | borderline |
| Slyc01G0024190.1 | Alkaloid | PYKS | high | pass |
| Slyc01G0043050.1 | Alkaloid | PYKS | high | pass |
| Slyc02G0008210.1 | Alkaloid | PYKS | low | borderline |
| Slyc02G0026160.1 | Alkaloid | PYKS | low | borderline |
| Slyc03G0000380.1 | Alkaloid | PYKS | low | borderline |
| Slyc03G0019950.1 | Alkaloid | PYKS | low | borderline |
| Slyc04G0014800.1 | Alkaloid | PYKS | low | borderline |
| Slyc04G0025740.1 | Alkaloid | PYKS | low | borderline |
| Slyc05G0004500.1 | Alkaloid | PYKS | low | borderline |
| Slyc05G0004510.1 | Alkaloid | PYKS | low | borderline |
| Slyc05G0007740.1 | Alkaloid | PYKS | low | borderline |
| Slyc05G0021640.1 | Alkaloid | PYKS | high | pass |
| Slyc05G0022030.1 | Alkaloid | PYKS | high | pass |
| Slyc06G0007850.1 | Alkaloid | PYKS | medium | pass |
| Slyc06G0007860.1 | Alkaloid | PYKS | high | pass |
| Slyc06G0011560.1 | Alkaloid | PYKS | low | borderline |
| Slyc06G0011580.1 | Alkaloid | PYKS | low | borderline |
| Slyc06G0011590.1 | Alkaloid | PYKS | low | borderline |
| Slyc06G0016560.1 | Alkaloid | PYKS | low | borderline |
| Slyc08G0001730.1 | Alkaloid | PYKS | low | borderline |
| Slyc08G0013550.1 | Alkaloid | PYKS | low | borderline |
| Slyc08G0013700.1 | Alkaloid | PYKS | low | borderline |
| Slyc09G0016230.1 | Alkaloid | PYKS | low | borderline |
| Slyc09G0016250.1 | Alkaloid | PYKS | low | borderline |
| Slyc09G0020790.1 | Alkaloid | PYKS | low | borderline |
| Slyc09G0023320.1 | Alkaloid | PYKS | high | pass |
| Slyc10G0004450.1 | Alkaloid | PYKS | low | borderline |
| Slyc11G0024080.1 | Alkaloid | PYKS | low | borderline |
| Slyc11G0024090.1 | Alkaloid | PYKS | low | borderline |
| Slyc12G0001870.1 | Alkaloid | PYKS | low | borderline |
| Slyc12G0018570.1 | Alkaloid | PYKS | low | borderline |
| Slyc12G0022530.1 | Alkaloid | PYKS | high | pass |
| Slyc01G0005160.1 | Alkaloid | SGD | medium | pass |
| Slyc01G0005370.1 | Alkaloid | SGD | medium | pass |
| Slyc01G0013480.1 | Alkaloid | SGD | low | borderline |
| Slyc01G0020030.1 | Alkaloid | SGD | low | borderline |
| Slyc01G0020050.1 | Alkaloid | SGD | medium | pass |
| Slyc01G0020060.1 | Alkaloid | SGD | medium | pass |
| Slyc01G0020980.1 | Alkaloid | SGD | medium | pass |
| Slyc01G0020990.1 | Alkaloid | SGD | medium | pass |
| Slyc01G0021000.1 | Alkaloid | SGD | low | borderline |
| Slyc01G0021010.1 | Alkaloid | SGD | medium | pass |
| Slyc02G0020200.1 | Alkaloid | SGD | medium | pass |