PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Slyc12G0003160.1 Flavonoid 4CL low borderline
Slyc12G0015260.1 Flavonoid 4CL medium pass
Slyc12G0016050.1 Flavonoid 4CL low borderline
Slyc12G0020910.1 Flavonoid 4CL medium pass
Slyc12G0023850.1 Flavonoid 4CL medium pass
Slyc01G0003430.1 Flavonoid ANR medium borderline
Slyc01G0003440.1 Flavonoid ANR medium borderline
Slyc01G0003450.1 Flavonoid ANR medium borderline
Slyc01G0022160.1 Flavonoid ANR medium borderline
Slyc01G0025740.1 Flavonoid ANR medium borderline
Slyc01G0033880.1 Flavonoid ANR medium borderline
Slyc02G0021640.1 Flavonoid ANR low borderline
Slyc02G0025180.1 Flavonoid ANR medium borderline
Slyc02G0027230.1 Flavonoid ANR low borderline
Slyc02G0030630.1 Flavonoid ANR low borderline
Slyc03G0004710.1 Flavonoid ANR medium borderline
Slyc04G0007020.1 Flavonoid ANR medium borderline
Slyc04G0018640.1 Flavonoid ANR medium borderline
Slyc04G0028160.1 Flavonoid ANR low borderline
Slyc04G0028200.1 Flavonoid ANR medium borderline
Slyc05G0019380.1 Flavonoid ANR medium borderline
Slyc05G0021070.1 Flavonoid ANR low borderline
Slyc10G0004720.1 Flavonoid ANR medium borderline
Slyc10G0004730.1 Flavonoid ANR medium pass
Slyc10G0004740.1 Flavonoid ANR medium borderline
Slyc11G0023590.1 Flavonoid ANR medium borderline
Slyc12G0000380.1 Flavonoid ANR medium borderline
Slyc12G0020170.1 Flavonoid ANR low borderline
Slyc01G0011160.1 Flavonoid ANS/LDOX medium pass
Slyc01G0013570.1 Flavonoid ANS/LDOX medium borderline
Slyc02G0014900.1 Flavonoid ANS/LDOX medium borderline
Slyc02G0014930.1 Flavonoid ANS/LDOX medium borderline
Slyc02G0015050.1 Flavonoid ANS/LDOX medium borderline
Slyc04G0002880.1 Flavonoid ANS/LDOX medium borderline
Slyc04G0011950.1 Flavonoid ANS/LDOX medium pass
Slyc05G0021220.1 Flavonoid ANS/LDOX medium borderline
Slyc07G0020290.1 Flavonoid ANS/LDOX medium borderline
Slyc07G0020370.1 Flavonoid ANS/LDOX medium borderline
Slyc07G0020380.1 Flavonoid ANS/LDOX medium borderline
Slyc08G0010760.1 Flavonoid ANS/LDOX medium borderline
Slyc08G0010780.1 Flavonoid ANS/LDOX medium pass
Slyc09G0009520.1 Flavonoid ANS/LDOX medium pass
Slyc09G0012310.1 Flavonoid ANS/LDOX low borderline
Slyc10G0002760.1 Flavonoid ANS/LDOX medium borderline
Slyc10G0002770.1 Flavonoid ANS/LDOX medium borderline
Slyc10G0007550.1 Flavonoid ANS/LDOX low borderline
Slyc10G0017200.1 Flavonoid ANS/LDOX medium borderline
Slyc10G0017210.1 Flavonoid ANS/LDOX medium borderline
Slyc12G0014810.1 Flavonoid ANS/LDOX low borderline
Slyc02G0024890.1 Flavonoid C4H low borderline