PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

2234
Candidate Protein Records
1896
Pathway-Level Records
4749
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Slyc02G0014930.1 Flavonoid ANS/LDOX medium borderline
Slyc02G0015050.1 Flavonoid ANS/LDOX medium borderline
Slyc04G0002880.1 Flavonoid ANS/LDOX medium borderline
Slyc04G0011950.1 Flavonoid ANS/LDOX medium pass
Slyc05G0021220.1 Flavonoid ANS/LDOX medium borderline
Slyc07G0020290.1 Flavonoid ANS/LDOX medium borderline
Slyc07G0020370.1 Flavonoid ANS/LDOX medium borderline
Slyc07G0020380.1 Flavonoid ANS/LDOX medium borderline
Slyc08G0010760.1 Flavonoid ANS/LDOX medium borderline
Slyc08G0010780.1 Flavonoid ANS/LDOX medium pass
Slyc09G0009520.1 Flavonoid ANS/LDOX medium pass
Slyc09G0012310.1 Flavonoid ANS/LDOX low borderline
Slyc10G0002760.1 Flavonoid ANS/LDOX medium borderline
Slyc10G0002770.1 Flavonoid ANS/LDOX medium borderline
Slyc10G0007550.1 Flavonoid ANS/LDOX low borderline
Slyc10G0017200.1 Flavonoid ANS/LDOX medium borderline
Slyc10G0017210.1 Flavonoid ANS/LDOX medium borderline
Slyc12G0014810.1 Flavonoid ANS/LDOX low borderline
Slyc02G0024890.1 Flavonoid C4H low borderline
Slyc02G0035700.1 Flavonoid C4H low borderline
Slyc04G0024880.1 Flavonoid C4H low borderline
Slyc05G0006360.1 Flavonoid C4H medium borderline
Slyc05G0017900.1 Flavonoid C4H medium borderline
Slyc05G0024000.1 Flavonoid C4H medium borderline
Slyc06G0006370.1 Flavonoid C4H medium borderline
Slyc06G0027110.1 Flavonoid C4H low borderline
Slyc06G0027120.1 Flavonoid C4H medium pass
Slyc11G0002700.1 Flavonoid C4H medium borderline
Slyc02G0011140.1 Flavonoid CHI medium pass
Slyc05G0005580.1 Flavonoid CHI medium pass
Slyc05G0005590.1 Flavonoid CHI medium pass
Slyc05G0020700.1 Flavonoid CHI medium pass
Slyc01G0024190.1 Flavonoid CHS medium pass
Slyc01G0043050.1 Flavonoid CHS medium pass
Slyc05G0021640.1 Flavonoid CHS medium pass
Slyc05G0022030.1 Flavonoid CHS medium pass
Slyc06G0007850.1 Flavonoid CHS medium pass
Slyc06G0007860.1 Flavonoid CHS medium pass
Slyc09G0023320.1 Flavonoid CHS medium pass
Slyc12G0022530.1 Flavonoid CHS medium pass
Slyc00G0001980.1 Flavonoid DFR low borderline
Slyc01G0017350.1 Flavonoid DFR medium borderline
Slyc01G0022150.1 Flavonoid DFR low borderline
Slyc01G0029180.1 Flavonoid DFR low borderline
Slyc03G0028390.1 Flavonoid DFR medium borderline
Slyc04G0002990.1 Flavonoid DFR medium borderline
Slyc05G0019390.1 Flavonoid DFR medium borderline
Slyc06G0014050.1 Flavonoid DFR medium pass
Slyc06G0018530.1 Flavonoid DFR medium borderline
Slyc08G0000140.1 Flavonoid DFR low borderline